BAC Information

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BAC

Clone NameMSMg01-437O24
Chromosome11 (Build37)
Map Location 116,195,728 - 116,196,182
singlet/doubletsinglet
Overlap geneFoxj1
Upstream geneOtop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7
Downstream geneLOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437O24.T7 (MSMg01no437_o24.b1)MSMg01-437O24.TJ (MSMg01no437_o24.g1)
ACCAG528651AG528652
length767780
length of high quality
(start - end)		459 (48 - 506)147 (79 - 225)
definitionCHROMAT_FILE: MSMg01no437_o24.b1 PHD_FILE: MSMg01no437_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:30 2005CHROMAT_FILE: MSMg01no437_o24.g1 PHD_FILE: MSMg01no437_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCAGCCATTGCAGGCTGGTCAGGCTGTCATCCAGGGCGTCC
GGCTCCTCCATGCCGCCCTCCGGCCCGGCTTCCTCTCCGGGACCCGCTCC
GCAGAGGCGCAGCCAGCTCTCCGCCATGTCTGCGGGGACTCTCCGAAGGG
GCGGTCAACATCCACAGGCTGAGCCGGAGTGGCCCGCCGCGCTCTCTGGC
CCGCTGGTAACCCAGACTCCAGTTACACAGTCTCCAGAACACTCACTTCC
ATTCTGCGACCCAGGGGGTCGCCTCCTCCGAACACGAATGTGAGGCCTGC
GGGAGCACCACGGAACTGAACACTCTTCCCCTACCCCGAGAGGAAAGAGG
CGCCTTAGGGGGGGAGCCCCTCACATTCATCCCCGCAGCCTGTGGCGAGG
TCAGGGAAACACAGGACCCTGGTCTGATCCTGCGTCTCCACCTCTCTCCA
TCTGCCCTTGAAGGGTTTGTTGTNCACAATGAGGGAAGAGGGTAGGAAGG
CCCCAATTAATTCTTTTCCCCAAGAGCGGGAAATTAAGATATCTTTCCCA
TTAGTCCCGTGGGGCTGGTCTAACCCGTTGTGTTATAATTATTTCCCTTT
GTTCCTTCTAAGATATTTCCCGCTTTTAACTCCTCCGATTCTGATCTCTC
TCCTTCCCACTTCTTCCTCCCCCAGTTTATCCTTCCTCGTGTTTCCTATC
ATATTCTTCCGGTATTG

NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCTCCTCCCGCTGTGAGT
TCCAGGATCAAATTCTGGTCCTCAACTTGTGCATGTGGTCTTGCTATGGT
GCCTAGGCGCCTCACATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTCTCCTTCCTTCTTTCTTTCTTTCCT
CCCTTCTTTCTTTCTCTCTTTCTTTCTCTCTTTCTCTCTTTCCTTCCTTC
CTTCTCCCCTTCCTCCCTTCCTTCTTTTTTTTTTTTTCNNCCCTCCCTTT
TCCCTCTCCCTTCTTTTTTCTTTCCCCCCCCNTTCTCTTCCCCCTCTCCC
CCCCTCTTTCTTTTTTCCCCCCCCCCCCCCCTCTCCTTTTCTTTCCTCTC
CTTTTCTTCCTTCCTCCCCCCTTCTTTTCTCCTCCCCCCCTCTTCCTCTT
TTTTTCCTTCCCTACTTTCCTTTCCTCTCTCTTTCTCTCTCCTTTCCCTT
CCCCCCCTTTTTTCCTCCTCCTCCCTCCTTTTTTTCCCCCCTTCCTCTTC
TCTTTTCTCCTTCCTCTTCCTCCCTCTCTTCTTTCCTTTCTCTCTTCTTT
CTTTCTCTTTTTCCTTTTCCTTTCTTCTTTTCTTCCTCTCTCTCCCCTTC
TTTTCTTTCTCCTCCNTTTTCTTTCTCCTTCTTCTTTCCCTTTCTCCCTT
TTCTTTTCTCTCTTTCCTCCTTCCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_o24.b1 MSMg01no437_o24.b1 CHROMAT_FILE:
MSMg01no437_o24.b1 PHD_FILE: MSMg01no437_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:30 2005
         (459 letters)



>mm_chr11_116195524_116196382
          Length = 859

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcagccattgcaggctggtcaggctgtcatccagggcgtccggctcctccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcagccattgcaggctggtcaggctgtcatccagggcgtccggctcctccat 264

                                                                       
Query: 65  gccgccctccggcccggcttcctctccgggacccgctccgcagaggcgcagccagctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccgccctccggcccggcttcctctccgggacccgctccgcagaggcgcagccagctctc 324

                                                                       
Query: 125 cgccatgtctgcggggactctccgaaggggcggtcaacatccacaggctgagccggagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgccatgtctgcggggactctccgaaggggcggtcaacatccacaggctgagccggagtg 384

                                                                       
Query: 185 gcccgccgcgctctctggcccgctggtaacccagactccagttacacagtctccagaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccgccgcgctctctggcccgctggtaacccagactccagttacacagtctccagaaca 444

                                                                       
Query: 245 ctcacttccattctgcgacccagggggtcgcctcctccgaacacgaatgtgaggcctgcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcacttccattctgcgacccagggggtcgcctcctccgaacacgaatgtgaggcctgcg 504

                                                                       
Query: 305 ggagcaccacggaactgaacactcttcccctaccccgagaggaaagaggcgccttagggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagcaccacggaactgaacactcttcccctaccccgagaggaaagaggcgccttagggg 564

                                                                       
Query: 365 gggagcccctcacattcatccccgcagcctgtggcgaggtcagggaaacacaggaccctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggagcccctcacattcatccccgcagcctgtggcgaggtcagggaaacacaggaccctg 624

                                              
Query: 425 gtctgatcctgcgtctccacctctctccatctgcc 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctgatcctgcgtctccacctctctccatctgcc 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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