BAC Information

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BAC

Clone NameMSMg01-438D19
Chromosome11 (Build37)
Map Location 48,667,470 - 48,667,814
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7
Downstream geneIrgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438D19.T7 (MSMg01no438_d19.b1)MSMg01-438D19.TJ (MSMg01no438_d19.g1)
ACCAG528879AG528880
length764804
length of high quality
(start - end)
564 (42 - 605)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no438_d19.b1 PHD_FILE: MSMg01no438_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:57 2005CHROMAT_FILE: MSMg01no438_d19.g1 PHD_FILE: MSMg01no438_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATTTACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAAC
TCACACAATATGTACTAACTGATAAGTGGATATTAGCCCCAAATCTAAGA
TACCCCAGATATAAGATACAATTTTCCTAAACACTTGAAACTTCAGAAAA
AAGAAGACTGAGGTGTGGACACTATGCCCCCTCCTTAGAAATGGGGACAA
AAAAACCCTTTGGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACTGAGAGTTTGCCCTCATTCTGTACAC
TTTACTTTTGCCAACGAACTTAATTAGTTATGGATTGAGGTTTTTTTCTT
AAAAGATTAAGTGGAAAGAACAAAGTTAGTCGTTGGGCCAGCCGGATGTT
AGGAAAGTGAGCGCCTACTTGTATTTTCCTTTCTTTAATTCCACGCGGAG
GTGACAGAGACCTACAGTCCCGCGACGCGACACGCCACACTGGCGGGCAA
CAAGAACCGCAGACACAGTTGTCCTGCGGTGCCGGAGACGCGGAGGCTGG
CCTAGTGGCGAAGGGGCGCATTGGTGCAAAGCTCTCCGTCCAGAAAGGGG
AAGTGGGTTTGAGCTACCCCAGCGCGTGACAGCCTAGTCGATTGGGACGA
CAGGGGCGCTGAGTAGGGAGTGACCTCCATAAGAGAGTACAGAATAGGAA
CTAGCGAGGGAAAACATAGCTCTGGAGGTATGATCCTGATAGGTAATATT
TGTAGGCTATCTGATTTCCCGGTTCTTGGCATTTCTTCTCCTGGCTTGTG
GCCTTCTGGACTAGGCTCATGTTCCTGTCCCTTCTATCTCACGTTTCTTT
TTTTTTCCTTTTTCCCGTTTTTGTTTCCCGGATTATTTTGGTCGTTTATA
TTATTCTTCTTTTGCCCCTCTTGCTTCTATTTAATTCTTTCATCCCCTGT
ATTCGTATATCATTACTTCGGTTTTTTCTATATTCGTTCATACATTTACC
TCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_d19.g1 MSMg01no438_d19.g1 CHROMAT_FILE:
MSMg01no438_d19.g1 PHD_FILE: MSMg01no438_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:57 2005
         (345 letters)



>mm_chr11_48667270_48668014
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgagagtttgccctcattctgtacactttacttttgccaacgaacttaattagttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aactgagagtttgccctcattctgtacactttacttttgccaacgaacttaattagttat 486

                                                                       
Query: 61  ggattgaggtttttttcttaaaagattaagtggaaagaacaaagttagtcgttgggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggattgaggtttttttcttaaaagattaagtggaaagaacaaagttagtcgttgggccag 426

                                                                       
Query: 121 ccggatgttaggaaagtgagcgcctacttgtattttcctttctttaattccacgcggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccggatgttaggaaagtgagcgcctacttgtattttcctttctttaattccacgcggagg 366

                                                                       
Query: 181 tgacagagacctacagtcccgcgacgcgacacgccacactggcgggcaacaagaaccgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgacagagacctacagtcccgcgacgcgacacgccacactggcgggcaacaagaaccgca 306

                                                                       
Query: 241 gacacagttgtcctgcggtgccggagacgcggaggctggcctagtggcgaaggggcgcat 300
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacacagttgcccagcggtgccggagacgcggaggctggcctagtggcgaaggggcgcat 246

                                                        
Query: 301 tggtgcaaagctctccgtccagaaaggggaagtgggtttgagcta 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggtgcaaagctctccgtccagaaaggggaagtgggtttgagcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)