Query= MSMg01no438_h02.b1 MSMg01no438_h02.b1 CHROMAT_FILE:
MSMg01no438_h02.b1 PHD_FILE: MSMg01no438_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:13 2005
(457 letters)
>mm_chr11_56611667_56612522
Length = 856
Score = 868 bits (449), Expect = 0.0
Identities = 455/457 (99%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 catagattttttttccacacagactgagcccagttctctcttaggcagcaaatcttagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagattttttttccacacagactgagcccagttctctcttaggcagcaaatcttagga 260
Query: 61 ggcccctgaaagggaccagaagctttcaagggatgctccagagggggccacttccctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcccctgaaagggaccagaagctttcaagggatgctccagagggggccacttccctggt 320
Query: 121 gtggttctcaggagcttcagggatgctgtgcagctgtgatcctccccatcacagctattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggttctcaggagcttcagggatgctgtgcagctgtgatcctccccatcacagctattg 380
Query: 181 tctgcagcttctcttggcttagtcagccaattacacagcagccagaccattttggcgtct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tctgcagcttctcttggcttagtcagccaattacacagcagccagaccattttggc-tct 439
Query: 241 gtaagaagtttggacttcactgcatctctgccttcttctcctttcaagctatttcctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtaagaagtttggacttcactgcatctctgccttcttctcctttcaagctatttcctctc 499
Query: 301 tttcttcctcccctaattagggaagtttataagcacaagcagctgtagagcgaatcgttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 tttcttcctcccctaattagggaagtttataagcacaagcagctgtagagtgaatcgttt 559
Query: 361 ctaagaattcaagctgagaaacctttttctcctaggcaacatttcataattttaacttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctaagaattcaagctgagaaacctttttctcctaggcaacatttcataattttaacttct 619
Query: 421 gtagagacaaaaccatgtttgtatggtaagtatgtgt 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtagagacaaaaccatgtttgtatggtaagtatgtgt 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space: 378162
Effective search space used: 378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_h02.g1 MSMg01no438_h02.g1 CHROMAT_FILE:
MSMg01no438_h02.g1 PHD_FILE: MSMg01no438_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:13 2005
(468 letters)
>mm_chr11_56811801_56812665
Length = 865
Score = 679 bits (351), Expect = 0.0
Identities = 435/485 (89%), Gaps = 38/485 (7%)
Strand = Plus / Minus
Query: 1 agtttagaatactcaggtgacattagggtatttcaagttgacaacttcaatgttgttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtttagaatactcaggtgacattagggtatttcaagttgacaacttcaatgttgttgtg 642
Query: 61 ccctgcctgaccatcacagacacagagagagccacagcactgctgagtatatgggaaacg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccctgcctgaccatcacagacacagagagagccacagcactgctgagtatatgggaaaca 582
Query: 121 ttacccaactgc-attggaggtacacagggggctgagggctacatcatggaaatcaccaa 179
|||||||||| | || |||||||||||||||||||||| |||
Sbjct: 581 ttacccaact-ctat-----------------ctgagggctacatcatggaaat---caa 543
Query: 180 ggcagtgttcttaggtctgacacctggataagtttatatccatacccatagatttacctg 239
|||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 542 ggcagtctccttgggtctgacacctggataagtttatatccatacccatatatttacctg 483
Query: 240 cttgtttctcaaaatgtctgtcacaacaaaacttgctattgaaccccaaggtacctacca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 482 cttgtttctcaaaatgtctgtcacaacaaaacttgctattggaccccaaggtacctacca 423
Query: 300 cttttagaagtagtgtaagccctctggctctgcctttgacaccattggtgtgcatc---- 355
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 422 ctttcagaagtagtgtaagccccctggctctgcctttgacatcattggtgtgcatctgtg 363
Query: 356 ------------tgtgtgtgtgtgtgtatgcatacatttctgtatgtacaggttcacact 403
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 tgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatacatttctgtgtgtacaggttcacact 303
Query: 404 tgtatattcatgcaaagatcagaggacaacttcacagatgacttccacttcatcttaaat 463
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 302 tgtatattcatgcaaagatcagaggacaacttcacaggtgacttctacttcatcttaaat 243
Query: 464 tatgt 468
|||||
Sbjct: 242 tatgt 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 865
Length adjustment: 10
Effective length of query: 458
Effective length of database: 855
Effective search space: 391590
Effective search space used: 391590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
