BAC Information

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BAC

Clone NameMSMg01-438L05
Chromosome11 (Build37)
Map Location 91,514,347 - 91,514,673
singlet/doubletsinglet
Overlap genenone
Upstream geneTom1l1, LOC638903, EG664976, Kif2b
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438L05.T7 (MSMg01no438_l05.b1)MSMg01-438L05.TJ (MSMg01no438_l05.g1)
ACCAG529233AG529234
length776785
length of high quality
(start - end)
516 (37 - 552)332 (68 - 399)
definitionCHROMAT_FILE: MSMg01no438_l05.b1 PHD_FILE: MSMg01no438_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005CHROMAT_FILE: MSMg01no438_l05.g1 PHD_FILE: MSMg01no438_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAATTCAAG
GCCCATATCTCAACATGATAAAAGCAATCTACAGCAAACCAGAAGCCAAC
ATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC
TAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG
TATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATT
GGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACA
GCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCC
TTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC
ACACTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAA
CTAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAATCTCTGAAGAAA
GAAATTAAAGAAGATCTCAGAAGATGGGAAGATCTCCCATGCTCATGGAT
TGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAGCAATCTACAG
ATTCCATGCAATCCCCATCAAATTCCAACCCATTTCCTTCACGAATTAAA
AAGAGCAATTTGGAAATTCCTCTGGGAAAACCAAAAAACCTAGGAAAGGC
AAAATCCTCCTCCACGAAGAAAAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAATTTTAAAATGTGATCATGTTGACCCACTT
TTGTAAAACCAGTGCGGAAGCTGGCTAGTCTCTAGCCTTCTTGCACAATC
CCAGAAATGAGAGACCCTGACTAAAAAATCAAGGTGAAAGATACTTAGTG
AATGACAATTGAATTTATATTTTGACCTTCCTTTATATGCACATGGACAC
ACACACACGAGGGGAGAGTGGAATTTAAGGTCATATTTTTATTGAAGATT
TTTCTTCAATTTTCCTTGTTTATATTTCCTTCTAAATCCTGTCTTCTGAC
AACTTTTCTCCCCCCACCTACATATCTCATGTGTGACAATTCACGCAAAT
GAATAAATCATATCCCCCCCCACATTTTTGAAATATTTTTCCATTTACTA
AATTCCATACATAGAGTTTAGTAGTTTTTTTCTATTTTTTGTTACGGTCT
TCTTACCTTCTTGCCATATCATATCTTCTCTTTGCGTATATGTGCTCCTT
TACTCTCTCATGTTGTCACTTGTTTTTTTTTTCATCTCTTGCTTTTTGCC
CTATATTCGTACTTCTCTTTCTTTTCCTCTTTACCACCTTTTTTTTCCAC
TCTTCTTCTTCTTTATTTGCCTTCTCTATACACCCTTCCCCATCTTTCTT
TTTCTCTCTCTTATTTCGGTCACTCCTTTATCCTTCTTCATTAACTGCCA
TTTCGTTATTTTTTGTTTCTTTTCTTTTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_l05.g1 MSMg01no438_l05.g1 CHROMAT_FILE:
MSMg01no438_l05.g1 PHD_FILE: MSMg01no438_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:35 2005
         (332 letters)



>mm_chr11_91513957_91514687
          Length = 731

 Score =  600 bits (310), Expect = e-176
 Identities = 323/328 (98%), Gaps = 3/328 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaattttaaaatgtgatcatgttgacccacttttgtaaaaccagtgcggaagctggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acaattttaaaatgtgatcatgttgacccacttttgtaaaaccagtgcggaagctggcta 658

                                                                       
Query: 61  gtctctagccttcttgcacaatcccagaaatgagagaccctgactaaaaaatcaaggtga 120
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtctctagccttcttgctcaatctcagaaatgagagaccctgactaaaaaatcaaggtga 598

                                                                       
Query: 121 aagatacttagtgaatgacaattgaatttatattttgaccttcctttatatgcacatgg- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 597 aagatacttagtgaatgacaattgaatttatattttgaccttcctttatatgcacatgga 538

                                                                       
Query: 180 -acacacacacacgaggggagagtggaatttaaggtcatatttttattgaagatttttct 238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cacacacacacacgaggggagagtggaatttaaggtcatatttttattgaagatttttct 478

                                                                       
Query: 239 tcaattttccttgtttatatttccttctaaatcctgtcttctgacaacttttctcccccc 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 477 tcaattttccttgtttatatttccttctaaatcctgtcttctgacaacttttct-ccccc 419

                                       
Query: 299 acctacatatctcatgtgtgacaattca 326
           ||||||||||||||||||||||||||||
Sbjct: 418 acctacatatctcatgtgtgacaattca 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 731
Length adjustment: 9
Effective length of query: 323
Effective length of database: 722
Effective search space:   233206
Effective search space used:   233206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)