BAC Information

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BAC

Clone NameMSMg01-438P18
Chromosome11 (Build37)
Map Location 67,993,456 - 67,993,835
singlet/doubletsinglet
Overlap geneStx8
Upstream geneMyh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438P18.T7 (MSMg01no438_p18.b1)MSMg01-438P18.TJ (MSMg01no438_p18.g1)
ACCAG529449AG529450
length792777
length of high quality
(start - end)
179 (190 - 368)470 (70 - 539)
definitionCHROMAT_FILE: MSMg01no438_p18.b1 PHD_FILE: MSMg01no438_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:58 2005CHROMAT_FILE: MSMg01no438_p18.g1 PHD_FILE: MSMg01no438_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAACACCGCGGAATTC
CTGCTGCTTCCCAAAACTCTCTTTAGCCTTTCCCCTGTCTGTGGATTGCA
GACCTGACTGTCGCTTTCATGTCTCCCTTCATGGGCTCCAGACTCTCCCC
AGCCTGGTCGGCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTTTTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCT
CCTCCTCCTCCTCCTCCACCACCACCACCACCTCCTCCACCTCCACCACC
ACCACCTCCTCCACCTTCTCCTTCTTCTCCTCCTCCTCCTTACCTCTCCC
CCCCCTTTCTATTCCTTTCCTTTTAAAAAAATTAACTATTTTTTTCAACC
AAAGAAACTTCCCTTGAAAACAACGCAAAACACACATTTTTTCCATCCAT
CATATTCCAAAACATTATTCCTACTACCATAACTCCATGTCCCACCTTTA
AACACCTAACAAAAAAAACAACAAACCCCACACAACCCCTTAATAACTAA
CAAAATAAAAAGAAAATCCTAAAAAAACAAATAACTTTTCCCCCTATAAA
ACAGTGAAATAAAAAACAAATACTATAAAACAAAAAAAAAAAATAACTAT
AATAAAACCACTTATAAACAAACAATTAAAATTTAATAAAAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCTTTAAAAGCATATAAAGCTATTCTTGA
ATTTAAACAGCCCAGACAGATGAAAAATATGTGTTTAAAAAGCCGGGTTG
GGCATCGAACCCCGGACCTGACCCGTGCGAGGCTGAAGCCTGACTGTTTG
CACTCCTAGCTGCTGAGAAGTACTTTGTTGTGATTTTTCAGACATGGCCC
CACTATGTGGCCATGGCTGGCCTGGAAGTCACTGTCTAGTCTCAAACTCA
CAGAGATGATCCACCTCTGTTTCCCTGAGCTGAGATGGCATGTGCCATCA
CATCCAGCTAGAAAACGACTCTCTGCAATAGTTGTCGAGGAGAAAATAAA
TGAAGAATCTTCTCATCAAAAGAATAATGGCTGGCTCCAGACCTACACTT
TAACATACCAGAATGAGGAAGCTTTGAGAGCTGGAGAGGTGCAGGTAAGC
AGGGAAAAAGAACATCAAACTATTTCTCATTTGACTTTGTAGGACATAAA
AAGTCAGCCTTCTCAGCCTCGCCCCACCCCCTTTAATTGGCAACTCTGTC
TTTCATGGNTATGGGTTAGGCTTGGTTTCCAGCAATGGGTTTGGCCTTTT
AAACCTTGTTTTTTCTAGGGTTCTGTTCACCAGATTTCCCAGGCCCCTGG
TTTATAAAACCCCCTTCCTTGTTCCCAAATATCGGCCCCTTAATTTTTTT
TAAGGTACCCTCCTCTTGTTGTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_p18.g1 MSMg01no438_p18.g1 CHROMAT_FILE:
MSMg01no438_p18.g1 PHD_FILE: MSMg01no438_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:58 2005
         (470 letters)



>mm_chr11_67992966_67993835
          Length = 870

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 91  ccccggacctgacccgtgcgaggctgaagcctgactgtttgcactcctagctgctgagaa 150
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 870 ccccggacctgacccgtgcgaggctgaagcctgactgtttgcactcccagctgctgagaa 811

                                                                       
Query: 151 gtactttgttgtgatttttcagacatggccccactatgtggccatggctggcctggaagt 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gtactttgttgtgatttttcagacatggccccactatgtggccatggctggcctggaagt 751

                                                                       
Query: 211 cactgtctagtctcaaactcacagagatgatccacctctgtttccctgagctgagatggc 270
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 750 cactgtctagtctcaaactcacagagatgatccacctctgcatccctgagctgagatggc 691

                                                                       
Query: 271 atgtgccatcacatccagctagaaaacgactctctgcaatagttgtcgaggagaaaataa 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atgtgccatcacatccagctagaaaacgactctctgcaatagttgtcgaggagaaaataa 631

                                                                       
Query: 331 atgaagaatcttctcatcaaaagaataatggctggctccagacctacactttaacatacc 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atgaagaatcttctcatcaaaagaataatggctggctccagacctacactttaacatacc 571

                                                                       
Query: 391 agaatgaggaagctttgagagctggagaggtgcaggtaagcagggaaaaagaacatcaaa 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaatgaggaagctttgagagctggagaggtgcaggtaagcagggaaaaagaacatcaaa 511

                               
Query: 451 ctatttctcatttgactttg 470
           ||||||||||||||||||||
Sbjct: 510 ctatttctcatttgactttg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)