Query= MSMg01no439_i04.b1 MSMg01no439_i04.b1 CHROMAT_FILE:
MSMg01no439_i04.b1 PHD_FILE: MSMg01no439_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:39 2005
(529 letters)
>mm_chr11_64327270_64328198
Length = 929
Score = 992 bits (513), Expect = 0.0
Identities = 522/525 (99%)
Strand = Plus / Minus
Query: 5 gaattccatgtctttctgagttaggtgagagaccctgtctcaaataaaaaaagaaaagtg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattccatgtctggctgagttaggtgagagaccctgtctcaaataaaaaaagaaaagtg 670
Query: 65 agcctctacattcttgtgtgtggctcccctcacaattgcacttgtgcacgcgcacacaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agcctctacattcttgtgtgtggctcccctcacaattgcacttgtgcacgcgcacacaca 610
Query: 125 tacaaccataaagccaacaaaaacaaaacaaaacaaataaacaagaaactcctgtatcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tacaaccataaagccaacaaaaacaaaacaaaacaaataaacaagaaactcctgtatcaa 550
Query: 185 ctggtatatcaaaacagcttctaaagagatggagtccacctgtcctgttactcctcgcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctggtatatcaaaacagcttctaaagagatggagtccacctgtcctgttactcctcgcac 490
Query: 245 agtgtatccactttgtgtaaacctgttgtggaactgtacactgcaagttgtatcgtttta 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 agtgtatccactttgtgtaaacctgttgtcgaactgtacactgcaagttgtatcgtttta 430
Query: 305 tgtatttacattatagttgaataaatatttcactacatattataaaaaataaatggccag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtatttacattatagttgaataaatatttcactacatattataaaaaataaatggccag 370
Query: 365 ttccccataaggctccaagaaaagcatgtgtttcataaaggccaaacaaaaaataaatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttccccataaggctccaagaaaagcatgtgtttcataaaggccaaacaaaaaataaatca 310
Query: 425 cttttgccaagcccggcatatctccgaatcgtagggttcatctatctaggattcctggac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttttgccaagcccggcatatctccgaatcgtagggttcatctatctaggattcctggac 250
Query: 485 cccacccatgagcactatgctcttactcccgataaaccataagaa 529
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cccacccatgagcactatgctcttactcccgataaaccataagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_i04.g1 MSMg01no439_i04.g1 CHROMAT_FILE:
MSMg01no439_i04.g1 PHD_FILE: MSMg01no439_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:39 2005
(562 letters)
>mm_chr11_64239473_64240433
Length = 961
Score = 971 bits (502), Expect = 0.0
Identities = 544/560 (97%), Gaps = 5/560 (0%)
Strand = Plus / Plus
Query: 5 ctggatccatcatgaggtaagatacttggcactgcctggctcttggtcaccacatctctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctggatccatcatgaggtaagatacttggcactgcctggctcttggtcaccacatctctc 264
Query: 65 ctggactattttctgtggctctcctggcttctccagatttcccatacctttcagtcttgt 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccggactattttctgtggctctcctggcttctccagatttcccatacctttcagtcttgt 324
Query: 125 ctgagcccctcttccatccttttggagttttgaggggaggcttcagagatgggcctcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagcccctcttccatccttttggagttttgaggggaggcttcagagatgggcctcctg 384
Query: 185 atgaagagcatcatagaccttctcccctctggcagctctgtactggagacttcccctct- 243
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 385 atgaagagcatcatagaccttctcccctctggcagctctgtcccggagacttcccctctg 444
Query: 244 -gtttttcttcctggaggtcagtgccccagcctccattatgatcagattcccttgtctct 302
| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 gg---ttcttcttggaggtcaatgccccagcctccattacgatcagattcccttgtctct 501
Query: 303 gctccagcgcctgttagacttgtgacttgaacagttcctactgccctcgctcttctctca 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctccagtgcctgttagacttgtgacttgaacagttcctactgccctcgctcttctctca 561
Query: 363 cctgccttccttgcctagacctgagcctgtttctgaccctcttgcaaaggtgtgaaacca 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctgccttccttgcctagtcctgagcctgtttctgaccctcttgcaaaggtgtgaaacca 621
Query: 423 tgacactcctacagactctcttactactcagctctgctctttatatcccctaccctttaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgacactcctacagactctcttactactcagctctgctctttatatcccctaccctttaa 681
Query: 483 atggtcattgacaaggtgactttatttttttaagcaaaaattttaatataaataaatttt 542
||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 682 atggtcattgaaaaggtgactttatttttttaagtaaaatttttaatataaataaatttt 741
Query: 543 taaaaatttactatgaaggc 562
||||||||||||||||||||
Sbjct: 742 taaaaatttactatgaaggc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
