BAC Information

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BAC

Clone NameMSMg01-439J14
Chromosome11 (Build37)
Map Location 71,456,978 - 71,602,029
singlet/doubletdoublet
Overlap geneWscd1
Upstream geneSlc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J14.T7 (MSMg01no439_j14.b1)MSMg01-439J14.TJ (MSMg01no439_j14.g1)
ACCAG529914AG529915
length763751
length of high quality
(start - end)
249 (67 - 315)241 (70 - 310)
definitionCHROMAT_FILE: MSMg01no439_j14.b1 PHD_FILE: MSMg01no439_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:46 2005CHROMAT_FILE: MSMg01no439_j14.g1 PHD_FILE: MSMg01no439_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,456,978 - 71,457,221)(71,601,790 - 71,602,029)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCTCTTTCCAATCTGATGATATCAATAATCAATCATGAAATGCCT
GTAATTGTCAAAGGTTCAGACTTATGGGAGAGGAGTGAGCGTATTAGGAA
AACAGAAGCCATAGCAGGTGTTTAAAACAAAGAGCACGGGGAGTGGGAGT
GTGCTTATAGAGAAACTGAAAGACCATGGAAGAAGATGCTGAGGTAGCCG
AAGACCTGAAAGAGGCTTGGAGAAATGCCTTGTCGGGGCAAGGATCCCAG
AGAAGGGCCATTGATTTTTTTTCCCCACGTGCCATTTCAGTTCTGTGCCT
TGGCATCAATGGCTCAATCGGATCTTCTGGTCACACTTTCTGAGTAGGGA
TCATTTTAGAGAATACCACCTATCATAATGCCTGGGATAGAAAGATATAG
GTGTTGCACAAGGGATGGATGACGCGCGCAGACTCTATGGCTAATCTTGC
ACTTTTCCCGGTTGCCGACTTTTACCCCTTCCTGATTCCTACTCTTTTAT
TTTTCCTCTTCCGTTCCCCTTCGTCTCTATCTTTTCTTCGCCCCCCCCCC
ATTGTCCCCTATCTTTCTATTCGCTGTTCTCTGTTTCCCCCCCTTCCCCT
CTCCTTTTTTCTTTATTTCCCCTTTTTTATTTCTCCCCCCCCCCCCCCCT
TTTTCTTATATCCCCCCCCCATTTTTTTTTATATTTTTCTCCGCCCCCCC
CCCCCTTCTTTCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGGTTCTTAGCAGGTTAGACTTGGAAGAGT
CCTAGGTCTGCCTGGAAAACTGTAATCTTGGGTGCCAAGTTCAGATAAAT
AGTCTGCCACGTGACAAGAGAGAACTCTCTCTCCTATATGCTGTGAGTTC
TTTGCCCTTTGCCCTGGGACTTTCCTGGACAGTGAGGAGTCTGTTTGAGC
CTGTGGGACCCAGGGCCTGATGCCAATGCAGGATAAAAGGATAAAAATCA
GATGCCGACTTAATCATTCCATCTCAAATCAGGACATATAACAGATATAA
CAGGATATATAATCCACCTCAAATCAGGGTGATATAACACATATTGAAGT
CCATAGACCCCACTATGATTGCAGAGCTGTCTCAGCTCCGTGCAAGCTCT
AGGTGTATATGACTTCATCACACACCTGGCGTTGGACATAGGACATCCTT
GTCCTGTCCTTTGCTGTTCCCTTTCACTCTCCCCCCCCTCCTTTTTTCCT
TTTTCCTTTCTTTTCCCTTTTTTTTTTTTTTTTCCCCCCTCTTTTTCCTC
TCCCTTCCTTTCCCTCTTCTGCCTTCTCCCATTACGCTTTTATTCTTTCC
TCTATCTTCCCATCCCCCTTATTATCCTTTTTTTTTCTTTACCCCTCCCC
TCCTCTTTCTTCTCTCCCTTCTTTCTTTTTCTTTTTCCCTCTTTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j14.b1 MSMg01no439_j14.b1 CHROMAT_FILE:
MSMg01no439_j14.b1 PHD_FILE: MSMg01no439_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:46 2005
         (249 letters)



>mm_chr11_71456778_71457426
          Length = 649

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgatatcaataatcaatcatgaaatgcctgtaattgtcaaaggttcagacttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctgatgatatcaataatcaatcatgaaatgcctgtaattgtcaaaggttcaggcttatg 260

                                                                       
Query: 61  ggagaggagtgagcgtattaggaaaacagaagccatagcaggtgtttaaaacaaagagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggagaggagtgagcgtattaggaaaacagaagccatagcaggtgtttaaaaaaaagagca 320

                                                                       
Query: 121 cggggagtgggagtgtgcttatagagaaactgaaagaccatggaagaagatgctgaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggggagtgggagtgtgcttatagagaaactgaaagaccatggaagaagatgctgaggta 380

                                                                       
Query: 181 gccgaagacctgaaagaggcttggagaaatgccttgtcggggcaaggatcccagagaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccgaagacctgaaagaggcttggagaaatgccttgtcggggcaaggatcccagagaagg 440

               
Query: 241 gcca 244
           ||||
Sbjct: 441 gcca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no439_j14.g1 MSMg01no439_j14.g1 CHROMAT_FILE:
MSMg01no439_j14.g1 PHD_FILE: MSMg01no439_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:46 2005
         (241 letters)



>mm_chr11_71601590_71602230
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggttcttagcaggttagacttggaagagtcctaggtctgcctggaaaactgtaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agggttcttagcaggttagacttggaagagtcctaggtctgcctggaaaactgtaatctt 381

                                                                       
Query: 61  gggtgccaagttcagataaatagtctgccacgtgacaagagagaactctctctcctatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggtgccaagttcagataaatagtctgccacgtgacaagagagaactctctctcctatat 321

                                                                       
Query: 121 gctgtgagttctttgccctttgccctgggactttcctggacagtgaggagtctgtttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 320 gctgtgagttctttgccctttgccctgggactttcctggacagtgaggagtctgggtgag 261

                                                                       
Query: 181 cctgtgggacccagggcctgatgccaatgcaggataaaaggataaaaatcagatgccgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctgtgggacccagggcctgatgccaatgcaggataaaaggataaaaatcagatgccgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)