BAC Information

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BAC

Clone NameMSMg01-439J24
Chromosome11 (Build37)
Map Location 102,449,383 - 102,449,845
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
Downstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J24.T7 (MSMg01no439_j24.b1)MSMg01-439J24.TJ (MSMg01no439_j24.g1)
ACCAG529934AG529935
length770769
length of high quality
(start - end)		465 (46 - 510)268 (71 - 338)
definitionCHROMAT_FILE: MSMg01no439_j24.b1 PHD_FILE: MSMg01no439_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:48 2005CHROMAT_FILE: MSMg01no439_j24.g1 PHD_FILE: MSMg01no439_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTGACTTCCCTGTGAAGTGGTCTGTTTAATCAGGGCCTCCCTG
GGTTGCTCTAGGGAGGCTGTAGGAATCTCTGCTCCTTGCACAACTGGAGA
GCTTGGAGTCGCTGAATGGCTTAGTGCAGGTTCTTTTTCAGCCTTCTAAG
ATGTGCAGTAAGAGATGCTTTTGTCTGAGTCCCCCCAGGAGACAATCCCA
TTCAGTGTCACTCCTGGGGGACTGCCTGCCATCAGCAGGGAGACAATTTC
CTTCCTGAGTCATTAATGCTAGTCCCCTGCAGAATTTACCTTATACATTC
GCTCCCCCCACAGTCTAGCAACTGTAGTCTGCTGTGGTTGTTAAGGTTCA
GTTAAACATTGGTGTGTCTTTTCATGTCAAATCATAAGATTGGGCTAATT
CCCAGGAAATATCTATTAATCAGAAGGCTCTGAGAATTTACTGAGATCAG
TTGTAATCTGCCTTCAGTCTTGGAGGNAAAGGAGAATATGGGAACCCGTT
AGGATCTTCCATCATGCCCCTAGGGAATGCCTCTATCTAGGCCAAAATAA
AAGGGAGTCCTGGAACTTTTGGTACCCCTTATTCAGAAGGCTTTTCCTCT
TCCCAGAACAACGGTTTTTTTTTTTCTTGAGTGGAAGGCTTTTAATAGGC
CCCTGGCGCTCCATATTCTAATCCTACAACCCTATTGTTTTTCCTCTCCT
CCCCGCCTCTTTCTTTTTTN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAGGGGGCACTGTTCTGAGCAGGGGGTGG
GTCTGGGAGACAGGGTATGGAGACCTGGGGGCCCCAAAGCAGTGGGAGCA
GTGGGGTCCTATACTGATGACCAGTGGCAGAATGAGGAAGCAAAAGAGAA
AGTGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCATG
TGCGTGTGCGCGTGCGCGTGTGTGTGTGTCTCGTCTGCAGGCCACCTGCT
GTTGAGTGCCAGTGTCTTTTTTTTTGCTCCAAGACTGTGAAGGAGCAGCT
AGGGATCTGTTTTTCTCTGACCTAATAGAGCCAGGGGCTGCTCTGTCAGG
TTCCTCCGTTTCCTACCCCCCCTGTCTTACGTTTGATCTTCAACTCTGCT
GCTCTGACTTTCGTTAGATTTTGCCTGCCCGCCATTTTATTTACTTTCGC
TCCCTCCTTTTCGCCTTCGTTCTCCCCGTCGCCCTTTCCTCCCTCCCCCC
CCCCTTTCTTTTTTCATTTTTTCCTTTCCTTTTCCCTTTCTTCTCCTCTT
TTCCCCCCCCTCTTTTCTCTTCCACTTATTTTTCCATGTCTTCCTTCTTC
CTCTAATCCTGTCTTTTTTTCCCTCTTTTTTCTCCCTCCCCCGCTTACTT
CTTCTTGTTTCTATCCCCCCTCCCCTCCTTTTTCTCTCTCTCTCTTTTTT
TTTTTTCCTCTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j24.b1 MSMg01no439_j24.b1 CHROMAT_FILE:
MSMg01no439_j24.b1 PHD_FILE: MSMg01no439_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:48 2005
         (465 letters)



>mm_chr11_102449181_102450045
          Length = 865

 Score =  851 bits (440), Expect = 0.0
 Identities = 457/466 (98%), Gaps = 7/466 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttgacttccc----tgtgaagtggtctgtttaatcagggcctccctgggtt 59
           |||||||||||||||   |    ||||| |||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttttgact---caggatgtgaggtggtctgtttaatcagggcctccctgggtt 259

                                                                       
Query: 60  gctctagggaggctgtaggaatctctgctccttgcacaactggagagcttggagtcgctg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 gctctagggaggctgtaggaatctctgctccttgcacaactggagagcttggagtcactg 319

                                                                       
Query: 120 aatggcttagtgcaggttctttttcagccttctaagatgtgcagtaagagatgcttttgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatggcttagtgcaggttctttttcagccttctaagatgtgcagtaagagatgcttttgt 379

                                                                       
Query: 180 ctgagtccccccaggagacaatcccattcagtgtcactcctgggggactgcctgccatca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgagtccccccaggagacaatcccattcagtgtcactcctgggggactgcctgccatca 439

                                                                       
Query: 240 gcagggagacaatttccttcctgagtcattaatgctagtcccctgcagaatttaccttat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagggagacaatttccttcctgagtcattaatgctagtcccctgcagaatttaccttat 499

                                                                       
Query: 300 acattcgctccccccacagtctagcaactgtagtctgctgtggttgttaaggttcagtta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acattcgctccccccacagtctagcaactgtagtctgctgtggttgttaaggttcagtta 559

                                                                       
Query: 360 aacattggtgtgtcttttcatgtcaaatcataagattgggctaattcccaggaaatatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacattggtgtgtcttttcatgtcaaatcataagattgggctaattcccaggaaatatct 619

                                                         
Query: 420 attaatcagaaggctctgagaatttactgagatcagttgtaatctg 465
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attaatcagaaggctctgagaatttactgagatcagttgtaatctg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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