Query= MSMg01no439_n02.b1 MSMg01no439_n02.b1 CHROMAT_FILE:
MSMg01no439_n02.b1 PHD_FILE: MSMg01no439_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:03 2005
(496 letters)
>mm_chr11_95154394_95155291
Length = 898
Score = 938 bits (485), Expect = 0.0
Identities = 489/491 (99%), Gaps = 2/491 (0%)
Strand = Plus / Minus
Query: 6 aatttcctgttctccttgctacaggaacttgttctaatatacaaggtctctgggcggggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aatttcctgttctccttgctacaggaacttgttctaatatacaaggtctctgggcggggc 637
Query: 66 tgggagactatttcttcacacgtttaaattttcaccaaataaaacgtgaaatgcttacat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgggagactatttcttcacacgtttaaattttcaccaaataaaacgtgaaatgcttacat 577
Query: 126 gtatttttctgccaaagaccctgctttttgtcttcattccaggtctttgtgtatgagaca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtatttttctgccaaagaccctgctttttgtcttcattccaggtctttgtgtatgagaca 517
Query: 186 gcttgccttctgtgtcagctcttcctgttgtctttttactgtcttaggctggatgagtgc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcttgccttctgtgtcagctcttcctgttgtctttttactgtcttaggctggatgagtgc 457
Query: 246 aagcatgactgtgttagcacctgattcagacgctgaccaaacacttggacttcttcccct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aagcatgactgtgttagcacctgattcagacgctgaccaaacacttggacttcttcccct 397
Query: 306 gaaaaataactgtcacggttattgtgacagtggtttcagaatgctcctctaccgcttgtc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaaaataactgtcacggttattgtgacagtggtttcagaatgctcctctaccgcttgtc 337
Query: 366 tctaaacatctgatagtgcttcgctttgcatcagtcttcttgaatcatggcctgaagtaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tctaaacatctgatagtgcttcgctttgcatcagtcttcttgaatcatggcctgaagtaa 277
Query: 426 tgtctataccttaagtaccttaagcagtttgagaaatttcagaccagggg--aaaaattg 483
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 tgtctataccttaagtaccttaagcagtttgagaaatttcagaccaggggaaaaaaattg 217
Query: 484 cgaataaagaa 494
|||||||||||
Sbjct: 216 cgaataaagaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_n02.g1 MSMg01no439_n02.g1 CHROMAT_FILE:
MSMg01no439_n02.g1 PHD_FILE: MSMg01no439_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:03 2005
(471 letters)
>mm_chr11_95038966_95039836
Length = 871
Score = 864 bits (447), Expect = 0.0
Identities = 467/477 (97%), Gaps = 6/477 (1%)
Strand = Plus / Plus
Query: 1 tcatgtacagaaagggctaaaccagaatatgtaatcacataaatatttagctatgtaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcatgtacagaaagggctaaaccagaatatgtaatcacataaatatttagctatgtaaga 254
Query: 61 attatggctttacccatattttagtggtttttctagacagagtttctctgtgtagccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attatggctttacccatattttagtggtttttctagacagagtttctctgtgtagccctg 314
Query: 121 gctgtcctagaactcattctgtagaccaggctggcctcgaactcagaaatctaactgcct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 gctgtcctagaactcattctgtagactaggctggcctcgaactcagaaatctaactgcct 374
Query: 181 ctgcctcctgagtgctaagattaaagaaccagaagtcttaaagatgctggacaagcattt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgcctcctgagtgctgagattaaagaaccagaagtcttaaagatgctggacaagcattt 434
Query: 241 tccttctactttttgttgttgttgttgttgtt------ttaagcaccagaaagtgaacct 294
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 tccttctactttttgttgttgttgttgttgttgttgttttaagcaccagaaagtgaacct 494
Query: 295 caggctttgtgcgtaccaagcacacacactactcttaaactccacccctaaccctagaga 354
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 caggctttgtgcgtaccaagcacacacactactcttaaactccacccctagccctagaga 554
Query: 355 attcagttatgaaagaataagttgtgttatttttaaataaaaaaataataacaacaacaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attcagttatgaaagaataagttgtgttatttttaaataaaaaaataataacaacaacaa 614
Query: 415 taataacaacaacccagggtctagaaatctagcttacatttgcctagcatccacaag 471
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 615 taataacaacaacccagggtctggaaatctagcttacatttgcctagcatccacaag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
