BAC Information

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BAC

Clone NameMSMg01-440A01
Chromosome11 (Build37)
Map Location 72,247,914 - 72,248,297
singlet/doubletsinglet
Overlap genenone
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik
Downstream geneGgt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440A01.T7 (MSMg01no440_a01.b1)MSMg01-440A01.TJ (MSMg01no440_a01.g1)
ACCAG530222AG530223
length740754
length of high quality
(start - end)		615 (57 - 671)606 (83 - 688)
definitionCHROMAT_FILE: MSMg01no440_a01.b1 PHD_FILE: MSMg01no440_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:16 2005CHROMAT_FILE: MSMg01no440_a01.g1 PHD_FILE: MSMg01no440_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGAAGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGGACAGTCACGGCTACACAGAGAAACCCTGTCTC
GAAAAACAAAACAAAACAAAGAAAAGCACTGACTGCTTTCCCCAAGATCA
TGAGTTCAAATCCCAGCAACCACATTGTGGCTCACAACCATCCATAATGA
GAAACAAATAAAAAACCTATGGCCTGGAGCGAGCAGGGCCAGGCAAGAGA
GAGAAGGGAAGGAGGGGGGGGGAATAAAATTAAAAAAATAAATAAATAAA
ATAAAATAGTTGTTGTGGAGATATGAATGAGCGTTAAGAGCACTTGAGGA
TCTTCTAGAAGATCTTCCAGAGCCACCTTCTGGCCTCCATAAGCACCAGG
CATGCATGTACTACACATACATATTCAGGCACTCACACATAAACGTTTTT
GAAATAGTGACTTCTGTGTATGTGTGAGTGTCTGCACTTATGTATGTGTA
CCATGTGAGTCTGAGAGCCCATGGGGGTCAGATGAGGTCACTAGATCCCT
GGAACTGAAGTTACAAACAGTTCTGAGCTGCTCTGTGGGTGCTAGGAACT
GAGTCTCAGACATCTGCAATAGCAACAAGTGTGTTTAGCAATCTTTATTC
TTTATTTTGAGACATGGTCTCACTATATAGCCCTGATTGACCTAGATCTC
TCTATGCAGACTTGGCTGGCCTCCAGCTTATTGATCCTAA

AAAACACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGACAGCTCTAT
CTTCTATAGATCTATAGAGAGACCCGGCTCAAAAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACA
GACAGACAGACAGACAGACAGACAGACAGACAGACAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAATTGCAATCTTTAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGC
ACTTGGGAGGTAGAGGCAGGCAGATTTCTGAGTTCAAGGACAGCCTGGTC
TACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTC
GAAGAAAGACAGACAGACAGACAGAAAGAAAGAGAGAGAGAGAAAGAAAG
AAAGAAAGAGAGAAAGAGAGAGAGAAAGAAAACAAAAGACAGAAGGAAGG
AAGGAAAAAGAAAAGTAGGAGAGAAAGGTAAACAAGACTTCTCTGGCTTC
TTCCCAGATGCCCTGACTGTTCCGCACTCCAGCTGCGTTCTGACTCTAAA
CGTTAACCGGTCTTACCTTGTTCTGAGCCTTGCTTAAGACACACAATGTG
TGCCGTTTCCTACCTGGCCTCTTTCACTCCCCATGGTCCCTCTGATTCAT
GTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_a01.g1 MSMg01no440_a01.g1 CHROMAT_FILE:
MSMg01no440_a01.g1 PHD_FILE: MSMg01no440_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:16 2005
         (606 letters)



>mm_chr11_72247492_72248497
          Length = 1006

 Score =  615 bits (318), Expect = e-180
 Identities = 353/384 (91%), Gaps = 30/384 (7%)
 Strand = Plus / Plus

                                                                       
Query: 253 tgcctttaatcccagcacttgggaggtagaggcaggcagatttctgagttcaaggacagc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgcctttaatcccagcacttgggaggtagaggcaggcagatttctgagttcaaggacagc 482

                                                                       
Query: 313 ctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcgaag 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcgaag 542

                                                                       
Query: 373 aaagacagacagacagacagaaagaaagagagagag------------------------ 408
           ||||||||||||||||||||||||||||||||||||                        
Sbjct: 543 aaagacagacagacagacagaaagaaagagagagagagagagagagagagagagagagag 602

                                                                       
Query: 409 ------agaaagaaagaaagaaagagagaaagagagagagaaagaaaacaaaagacagaa 462
                 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 603 aaagaaagaaagaaagaaagaaagagagaaagagagagagaaagaaaacaaaagacaaaa 662

                                                                       
Query: 463 ggaaggaaggaaaaagaaaagtaggagagaaaggtaaacaagacttctctggcttcttcc 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaaggaaggaaaaagaaaagtaggagagaaaggtaaacaagacttctctggcttcttcc 722

                                                                       
Query: 523 cagatgccctgactgttccgcactccagctgcgttctgactctaaacgttaaccggtctt 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cagatgccctgactgttccgcactccagctgcgttctgactctaaacgttaaccggtctt 782

                                   
Query: 583 accttgttctgagccttgcttaag 606
           ||||||||||||||||||||||||
Sbjct: 783 accttgttctgagccttgcttaag 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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