BAC Information

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BAC

Clone NameMSMg01-440D14
Chromosome11 (Build37)
Map Location 111,428,721 - 111,429,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D14.T7 (MSMg01no440_d14.b1)MSMg01-440D14.TJ (MSMg01no440_d14.g1)
ACCAG530391AG530392
length7371,619
length of high quality
(start - end)		584 (77 - 660)---
definitionCHROMAT_FILE: MSMg01no440_d14.b1 PHD_FILE: MSMg01no440_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:35 2005CHROMAT_FILE: MSMg01no440_d14.g1 PHD_FILE: MSMg01no440_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCTCCCATCATTACAAAACATTTATCTCCCTAGAATCAACTC
TATTTATGTTAAATTTAAAAAAGAAAAAGAAAAAAAAAAGATTTAACTTT
GGTTTTGCCTTTTCTGCCCTAACCATTTGGCTCACATTTAACAAACATTT
CCAGCTCTCCTCTAAAAAGTGGCATGTGTCAAAGTAAAGTGTCCTCAGAT
AGCTAGGCTCACTGAAACTCCAACAATATAATATCCCAGAATCCACCAAA
AGCATTGCACATGGGAAAAATAGAGCTATCTATAAGCTAGGCTGTGATTG
AGGGTCAAACAGTATCACAGTGACCATGCTTCTGTGGAGCCCAATTATAG
AGTAGATAGCATGTTATTAATTATGTGAAAGATCTGACCTGTGTGAAGTG
GGCATCGGGGTCCATGATTTAACTCACAATCAATCTCAGAGTCCTCGGAG
TACACAAAGAACCGACTCAGGAGCATTTGTATCTGGTTAAGAAATAAGAG
GATGCTGTCATCCAAGTATAGAAATCTCAAAAAGAAAATTACATCACCGC
ATACACATAAAAAGGATAGATCGGGGAAGCCATAATTTATAGCATGTACG
GAAGCTGATTAAATTGAAATTACATGGGAGATAGAAGTGCAACAGAACCA
CATCAAAACCTCCTATCTTACAACTGCAGAGCTGTGG

NCCCCCCATTACTAGAGAATAGATGGTAGTCAGGTTATAATTCGTAACTA
GAAGTGATCATACATATTATGATTGTTTTGCTCCAGCAGATGAGNGTAAG
TGGTGTGNCNNNCCACAACCACCAGAGCAGACATCCTCCCCGGGATATGA
AATCGAAGACATAATAATCTATAGCATATATGAAAATATATCAGANATTA
ATTCATATATTAATTGATATATTACTATTTAATTTGCAAAATTAAGAGAT
AAATAATAGAATATTATATTATTCTTAATAACGTAGAGGGTAGTTGTAGT
GTGTGAGANAGGATGTTGCGGTCTAGGGTGATAGGATGCCTTCTGTGATT
TATTAAGAATCGCTATATAACTATACCCTTATTGATGATTACACATCTAA
CACAACACCATAGACCCGCTTGTGACGCTCCACATTATCACATTATTTAT
TGACACTTCCACACATACTCGCAACACTCTATTCCCTAGATATTACATAC
TTACACTTGTCGACGTGTCATACTCAAAGTATCTTCTGCATTATAGTCTG
CATCGGTGTAGCAGAAGCTCGATTAAGACAGTAGTATATAATATCCACTA
TACGTCCTCAATGATGNGCTGATTAATCAGCTGTTTATTACCACTATATG
TATCACAACAGAGAGTAGAATAGAATGCCGAGATAGTACAGATATATCGT
CTTCCTATATTGTTATCATACACTTGTCTAACNCCGCTACGACCACGCCA
GACTCTCCATCTACGGCACACGCGCGGTCGCTTCTGTCGCAGGCGTCACA
ACACCTTCATATGTGAGTACTCTATACAGAGGAATTGTACGCATCNCNCA
TCACCTTCACTACAATATTCCTATATTNCACTCATCCTCCACTTCATCNG
CGTCCTTGTGTTTCTGGCTCGTTCTGTTCACCGCAATGGCTAGACTCACT
CCTCTGCTATATCACTCTTAGTGTAGTAGTCCGAGCTCTCATAGCGAACG
AGAGTACCTCTNACTTCGTCTAACATATATCTATGCGAGATAGATGTGAT
ATAATGACGTGACGAGCATACTACTATTCTATCTACATATATGCTATTCA
TACGTCTCACGTTTATAGCGTACTCACGCTCNCTAGCTCTAATCTATCCT
CTACTCATACACACATAAGATAGACATCAAATCATATAACTAANACTGTN
TATGTGTCACTCATGAGTGTCAGCTCAGNAGTGTATATGATTGTTAAATA
TACGATCATATTCGTAGCGCCGCTCTGTCCTGCTGCCACGGTTTGTGAGT
ATTGATGATAGCTTAATGTCAGTTTCTATCTAACAGATAAGCAGCCATGT
CGTGTGACGTGATGTTCGTCTTATCTTAGCATACTACAGGATATACGATC
GAATNATGTGAGTCTGATTGTGTAGCCCGAGTCCTGGCGCCTACCGCAAT
GAGCTCNAATGCTCATGAGAGACTCTGGCGTTCTCTACCAGACACTCGCT
CTATTCTTCAGTAAATCCTCCCGTATATCTCGAGAACAGCTCGTGCCTAA
TCTGAAACTACACTACATCCACTCTCCACAATCGACAAAGCGCGCCGTAA
TGCTCGATATACATCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d14.b1 MSMg01no440_d14.b1 CHROMAT_FILE:
MSMg01no440_d14.b1 PHD_FILE: MSMg01no440_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:35 2005
         (584 letters)



>mm_chr11_111428521_111429504
          Length = 984

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttatctccctagaatcaactctatttatgttaaatttaaaaaagaaaaagaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 catttatctccctagaatcaactctatttatgttaaatttaaaaaagaaaaagaaaaaaa 725

                                                                       
Query: 61  aaagatttaactttggttttgccttttctgccctaaccatttggctcacatttaacaaac 120
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 724 aaagatttagctttggttttgccttttctgccctaaccatttggctcacatttaacgaac 665

                                                                       
Query: 121 atttccagctctcctctaaaaagtggcatgtgtcaaagtaaagtgtcctcagatagctag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 664 atttccagctctcctctaaaaagtggcatgtgtcaaagtaaagtgtcctcagatagctgg 605

                                                                       
Query: 181 gctcactgaaactccaacaatataatatcccagaatccaccaaaagcattgcacatggga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 604 gctcaccgaaactccaacaatataatatcccagaatccaccaaaagcattgcacatgggg 545

                                                                       
Query: 241 aaaatagagctatctataagctaggctgtgattgagggtcaaacagtatcacagtgacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaaatagagctatctataagctaggctgtgattgagggtcaaacagtatcacagtgacca 485

                                                                       
Query: 301 tgcttctgtggagcccaattatagagtagatagcatgttattaattatgtgaaagatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgcttctgtggagcccaattatagagtagatagcatgttattaattatgtgaaagatctg 425

                                                                       
Query: 361 acctgtgtgaagtgggcatcggggtccatgatttaactcacaatcaatctcagagtcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acctgtgtgaagtgggcatcggggtccatgatttaactcacaatcaatctcagagtcctc 365

                                                                       
Query: 421 ggagtacacaaagaaccgactcaggagcatttgtatctggttaagaaataagaggatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggagtacacaaagaaccgactcaggagcatttgtatctggttaagaaataagaggatgct 305

                                                                       
Query: 481 gtcatccaagtatagaaatctcaaaaagaaaattacatcaccgcatacacataaaaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtcatccaagtatagaaatctcaaaaagaaaattacatcaccgcatacacataaaaagga 245

                                                       
Query: 541 tagatcggggaagccataatttatagcatgtacggaagctgatt 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tagatcggggaagccataatttatagcatgtacggaagctgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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