Query= MSMg01no440_m09.b1 MSMg01no440_m09.b1 CHROMAT_FILE:
MSMg01no440_m09.b1 PHD_FILE: MSMg01no440_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:20 2005
(486 letters)
>mm_chr11_69219634_69220519
Length = 886
Score = 884 bits (457), Expect = 0.0
Identities = 477/485 (98%), Gaps = 3/485 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtcttttccttgatcactgtaacctcgatcatctcccttaggagcagcggcac 64
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctgtctttcccttgctcactgtaacctcgatcatctcccttaggagcagcggcac 467
Query: 65 tcgatgcctcattcatatccatacccagctcccgcctactccgctcatccgcccagccat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcgatgcctcattcatatccatacccagctcccgcctactccgctcatccgcccagccat 407
Query: 125 cggctggtccccaacacaccccttggtccaggtccccgacccccaggagcagagagccat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cggctggtccccaacacaccccttggtccaggtccccgacccccaggagcagagagccat 347
Query: 185 ggctgcctgcctgccacccgtccccccggaagtgaccttagagagagcagagttcagagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggctgcctgcctgccacccgtccccccggaagtgaccttagagagagcagagttcagagg 287
Query: 245 tcgcggatggactccagcgtttcaccagcattttctaccgcctgcgtgccttacgcccct 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 286 tcgcggatggactccagcgtttcaccagcagcatctaccgcctgcgtgccttacgcccct 227
Query: 305 tcccggccccctggcctccccggcac---cagcagcagcagcagcagcagtagcagtaac 361
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 226 tcccggccccctggcctccccggcaccagcagcagcagcagcagcagcagtagcagtaac 167
Query: 362 aacactggtcttcggggtgtggagccaagcccaggcattgtatgttatgacattgggctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aacactggtcttcggggtgtggagccaagcccaggcattgtatgttatgacattgggctg 107
Query: 422 aaggtgggtgacattgtctgaggggccacaatagcacactgacctcccctttctccactt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 aaggtgggtgacattgtctgaggggccacaatagcacactgacctcccctttctccactt 47
Query: 482 gcagc 486
|||||
Sbjct: 46 gcagc 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_m09.g1 MSMg01no440_m09.g1 CHROMAT_FILE:
MSMg01no440_m09.g1 PHD_FILE: MSMg01no440_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:20 2005
(408 letters)
>mm_chr11_69020750_69021556
Length = 807
Score = 549 bits (284), Expect = e-160
Identities = 353/408 (86%), Gaps = 51/408 (12%)
Strand = Plus / Plus
Query: 1 actatttaaaattacttagagaggccgagcagtagtggtacacacctttaatcctggcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actatttaaaattacttagagaggccgagcagtagtggtacacacctttaatcctggcac 310
Query: 61 ttggaaggcagaggcagtcgaatttccgagtttgaggccagcctggtctacagagtgagt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 311 ttggaaggcagaggcagtcgaatttctgagtttgaggccagcctggtctacagagtgagt 370
Query: 121 tccaggacagccagggagggctaccagagaaaccctatcttgaaaaacaaataaaataaa 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 tccaggacagccagggagggctactagagaaaccctatcttgaaaaacaaataaaataaa 430
Query: 181 ataaaataaaataaaataaaataaaataaaataaaataaaataaaataaaataaaataaa 240
||||||||||||||||||||||||||||| |
Sbjct: 431 ataaaataaaataaaataaaataaaataa--t---------------------------- 460
Query: 241 ataaaataaaatataataacgtagagattctcagatggaaattacacatgctgtgatgta 300
||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 --------------------gtagagattctcagatggaaattacacatgctgtgatgta 500
Query: 301 agattaggagttggggagaattggcttcctagtaggctacagattttccccccctttcct 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 501 agattaggagttggggagaattggcttcctagtaggctacagatttttccccc-ttccct 559
Query: 361 ccccctgctgccccccactctcacaggcacatggggatttcttccagc 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccccctgctgccccccactctcacaggcacatggggatttcttccagc 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space: 318402
Effective search space used: 318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
