Query= MSMg01no440_o01.b1 MSMg01no440_o01.b1 CHROMAT_FILE:
MSMg01no440_o01.b1 PHD_FILE: MSMg01no440_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:28 2005
(556 letters)
>mm_chr11_93635143_93636099
Length = 957
Score = 969 bits (501), Expect = 0.0
Identities = 544/561 (96%), Gaps = 7/561 (1%)
Strand = Plus / Plus
Query: 3 gaattctcatcattcacatttgaattctcagctcaaatcctaccacgttgtgacctccgg 62
||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 197 gaattctcatcatccaaatttgaattctcagctcaaatcctaccacattatgacctccgg 256
Query: 63 gataccgtttaacttcaatgtgcctgtttccccagccataaatttgtggtgaaatgatat 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gacaccgtttaacttcaatgtgcctgtttccccagccataaatttgtggtgaaatgatat 316
Query: 123 ccaccttacaagactaagcatgaaataatgaatggtgagagttaacacatgagccaggaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccaccttacaagactaagcatgaaataatgaatggtgagagttaacacatgagccaggaa 376
Query: 183 catagtaaaagttaagtaggcgcaggctatttcatcatcatcactgttgttgttgtcatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catagtaaaagttaagtaggcgcaggctatttcatcatcatcactgttgttgttgtcatt 436
Query: 243 g----c--cgtcatcatcatcatcatcactattctcccttgtttgtgcagcttctcaaag 296
| | | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 437 gttgtcatcatcatcatcatcatcatcactattcccccttgtttgtgcagcttctcaaag 496
Query: 297 aggaacccgagccttgataaattccagctcaccagggtccataacaactccattatcata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggaacccgagccttgataaattccagctcaccagggtccataacaactccattatcata 556
Query: 357 gccataaagcactggggg-caccttgaacactctggctgatataatgctatactctgggt 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccataaagcactggggggcaccttgaacactctggctgatataatgctatactctgggt 616
Query: 416 gacagaggccagcccataaatatatcagaccaagcctcaaagccacagcactcagcccct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 617 gacagaggccagcccataaatatatcagaccaagcctcaaagccacagcactcagcctct 676
Query: 476 taaaagtcagcagtctgttctcctctcagaatatatcctcctggcagatgcagagtccca 535
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 677 taaaagtcagcagtctgttctcctctcagaatatatcctcctcgcagacgcagagtccca 736
Query: 536 tggcctaaatttccatacccc 556
|||||||||||||||||||||
Sbjct: 737 tggcctaaatttccatacccc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_o01.g1 MSMg01no440_o01.g1 CHROMAT_FILE:
MSMg01no440_o01.g1 PHD_FILE: MSMg01no440_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:28 2005
(523 letters)
>mm_chr11_93758961_93759883
Length = 923
Score = 762 bits (394), Expect = 0.0
Identities = 407/414 (98%), Gaps = 5/414 (1%)
Strand = Plus / Minus
Query: 110 aaaggaaggatgggagctacagctcagctggtagagtgcttgtttagaagactgaagccc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 aaaggaaggatgggagctacagctcagctggtagagtgcttgtttagaagactgaagccc 864
Query: 170 tgggtctgactgatccttgaaaagcataaactggtgttgtgtcacatgtctgtaatctca 229
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgggtctgactgacccttgaaaagcataaactggtgttgtgtcacatgtctgtaatctca 804
Query: 230 gcatttgggaggaaaaatagggcatcagaagttcatcattatccttaaggatgaatcaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcatttgggaggaaaaatagggcatcagaagttcatcattatccttaaggatgaatcaga 744
Query: 290 ccctgtctcaaccacaaccaactttacttctgagcttttttagagaaacgagacacacac 349
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 743 ccctgtctcaaccacaacca-----acttctgagcttttttagagaaacgagacacacac 689
Query: 350 acttactacttcaggaaatcatgaatccacacttttacttccaatcctactctactccca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acttactacttcaggaaatcatgaatccacacttttacttccaatcctactctactccca 629
Query: 410 aagagccttttctttctcacttcagtctgtatttttcttcccaagttaagaatgttgttc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagagccttttctttctcacttcagtctgtatttttcttcccaagttaagaatgttgttc 569
Query: 470 ctagacaaaaaccaacttacctatttaaaactaatttatatttgttttctgata 523
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 ctagacaaaaaccaacttacctatttaaaactaatctatatttgttttctgata 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
