Query= MSMg01no441_a01.b1 MSMg01no441_a01.b1 CHROMAT_FILE:
MSMg01no441_a01.b1 PHD_FILE: MSMg01no441_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
(552 letters)
>mm_chr11_104587312_104588261
Length = 950
Score = 1017 bits (526), Expect = 0.0
Identities = 546/554 (98%), Gaps = 4/554 (0%)
Strand = Plus / Minus
Query: 1 agccttccaaatgtgggaactacagaggtacgctccaccacgccccacataaccaagttc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agccttctaaatgtgggaactacagaggtacgctccaccacgccccacataaccaagttc 809
Query: 61 tctatgttctacttgatctttttcttttcagcctaattgtttttcctcgaactcattcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctatgttctacttgatctttttcttttcagcctaattgtttttcctcgaactcattcta 749
Query: 121 aatcaaattttctacctaccatcatagtcaggaaagttgtgttccttggagactgctgtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 748 aatcaaattttctacctaccatcatagtcaggaaagttgtgttccttggagactgccgtg 689
Query: 181 ataaagtcatctaaattcaccattccactttctgtaaaataaagaatttaaattgcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ataaagtcatctaaattcaccattccactttctgtaaaataaagaatttaaattgcacaa 629
Query: 241 tctggtatattttatattaaaaatatgtttcatttttattagattaagagaaaaactttc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctggtatattttacattaaaaatatgtttcatttttattagattaagagaaaaactttc 569
Query: 301 ccaatcctatactctttctaaaatgagtttttctgaattaggacacttcgtatcattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 568 ccaatcctatactctttctaaaatgagtttttctgaattaggacacttcgtatca--ttt 511
Query: 361 tttcccttttggtatctttgagatcataa--ttttttaaaatatttgtttatttacttat 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 tttcccttttggtatctttgagatcataattttttttaaaatatttgtttatttacttat 451
Query: 419 tttatttacttgtttgttttacaccagaaaaaggcatcagatcccactacagatggtcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttatttacttgtttgttttacaccagaaaaaggcatcagatcccactacagatggtcat 391
Query: 479 gagccaccatgtggttgcctagaattgaactcagggcctctggaagagcaatcagtgctc 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 390 gagccaccatgtggttgcctagaattgaactcaggacctctggaagagcaatcagtgctc 331
Query: 539 ttaactgctgagcc 552
||||||||||||||
Sbjct: 330 ttaactgctgagcc 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 950
Length adjustment: 10
Effective length of query: 542
Effective length of database: 940
Effective search space: 509480
Effective search space used: 509480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_a01.g1 MSMg01no441_a01.g1 CHROMAT_FILE:
MSMg01no441_a01.g1 PHD_FILE: MSMg01no441_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
(433 letters)
>mm_chr11_104383335_104384167
Length = 833
Score = 760 bits (393), Expect = 0.0
Identities = 426/445 (95%), Gaps = 16/445 (3%)
Strand = Plus / Plus
Query: 1 ttttgcatgtgtatatatgagctatgtaatttaccaaaggcatttgtgcaaccaaccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgcatgtgtatatatgagctatgtaatttaccaaaggcatttgtgcaaccaaccata 260
Query: 61 acagttatgagacagaattattcttctagaacaaagaaatccttttgtactacatttaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acagttatgagacagaattattcttctagaactaagaaatccttttgtactacatttaaa 320
Query: 121 ttgttgcatctttcctccagtctacttcctgaaaaaagccactaacattttta------t 174
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttgttgcatctttcctccagtctacttcctgaaaaaagccactaacatttttaatcattt 380
Query: 175 ta--tgatttggtcatttcaagactgacctatttaccaatgaccaaggagaatcacaaaa 232
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatgatttggtcatttcaagactgacctatttaccaatgaccaaggagaatcacaaaa 440
Query: 233 attatagctaggttcttttt----ataaattatttagttcagcgtggtggtgcatccctg 288
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatagctaggttct----ccaaataaattatttagttcagcgtggtggtgcatccctg 496
Query: 289 taatcccagcaccccagaaggtaaggaaggcaggaagatggcaatgttcagaccagcatg 348
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatcccagaaccccagaaggtaaggaaggcaggaagatggcaatgttcagaccagcatg 556
Query: 349 atctatataatgagctctctaaaaaaattaaaacaaaaccctttatttatttgagatgaa 408
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgtatataatgagctctctaaaaaaattaaaacaaaaccctttatttatttgagatgaa 616
Query: 409 gttatgaatgaatagaaatttcaaa 433
|||||||||||||||||||||||||
Sbjct: 617 gttatgaatgaatagaaatttcaaa 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
