BAC Information

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BAC

Clone NameMSMg01-442A01
Chromosome11 (Build37)
Map Location 86,998,935 - 87,166,516
singlet/doubletdoublet
Overlap geneTrim37, Ppm1e
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik
Downstream geneRad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442A01.T7 (MSMg01no442_a01.b1)MSMg01-442A01.TJ (MSMg01no442_a01.g1)
ACCAG531753AG531754
length756803
length of high quality
(start - end)
419 (91 - 509)233 (83 - 315)
definitionCHROMAT_FILE: MSMg01no442_a01.b1 PHD_FILE: MSMg01no442_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:59 2005CHROMAT_FILE: MSMg01no442_a01.g1 PHD_FILE: MSMg01no442_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,166,098 - 87,166,516)(86,998,935 - 86,999,167)
sequence
TTCTTCCTCAATATTTGCGGACGCTGAACGACGCACTAATCGAAGAGGAT
CCGCGAAATTCTCTATTATACCAAATAAAAGTCATTGAGGACTATGAATA
TAGTTTATTGCAAGGACAAGGTATAGATTAAAACCAGCCCAAGGAAGAGG
TGTACTCTACAAAAGCAGCAGAAGTCAAGAGTGTCCTATGCTCAGGAGTA
CATCATCCAGTGCAAATATGTGGCGCAGTGCTCAGAGTATGACATTCTGA
GTCCCACCCAAGTCCCAGTTTTCAGAATTCTCACTGGCATCTACACTTAG
GACTATCTCTGATGTAATCAGAGATTTTGTTTACGTTCCTCCTCAGACCT
GAGGACAAAGCTGGACCTTTCTTTAGGCAAAGCCGAGCTGTAGGTAGTGA
GACTTTGTATCCCTCTCCCCATCCACTTCTAGCAACTACACAGCTATAGC
AGACTACGACAGTGTGCATATCTTATTCTCTCTTTAATATCTGCATTTCC
GGGGTGGGTGGTTATGGGGTACTTTTTGGTATAGCATCGGACATTGTACA
TGATTTAACTACCTAATAATATATGCCCAAGAAAATAACATCTGCACTTC
CCCCATCGTGTCTTTTTATTCTGCTGGGAAATGCATTTCTTTCCATCACT
CAGGCCCAATCTTTTTGTTGCCTCTGTTTAGCGAAACATATCTCCACCTC
TTAATTAACTGCCCCGCTGTACCCCTTCTCTTAGTTCTCCTTTCCTTAAA
ATGACG
TGTTCTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGTGGATTTTGTTT
GTTTTTAGTTAAGATTAGGAGTCCAGAGTAGATTTTCTGTGGCTGTTGCT
TTTAAGATGGGAGACTTGGGTTTTATGTTTCATTTTACTCAATGTGTCAA
AGTACAACTGCCTTAGTCTATGAGCCCTATTTTCTTTCTTTAATTAATCA
GTGCATAATGTCATCAATCTTTCAATGGTCTGAGACAGTGGAGCCTGACT
GCCCTGGAACTCAGTATGTAGACCAGTCTAGGCTCTGCAAGCATGATGCA
CTCAGCTCCCACTCAAGTGTCAGTGTCCACAGGTGACAAGTGCTTAGCCT
CCTGAGTATATTGATTGTTACGACGTTGCACATAAGGCTTTCTTGACACC
TGTTTTTTTCTTGTACATGTTTCTGCTACTTCGTTTATTTCTTTCTTTCT
CTTTTTTTCCTCTTCCTCTTTCTCTCTTCTCCCCCCCTTTCTTCCTCTCC
TCTTTCTCTCTTTCTTATTCTCCCCCTTTTTTTTTCTCTTTTTCTCTCCC
TTCTTTTTCTCTTTCCTCCTCTTTACTATCCTCTTTTTCCTCCTCCCTCT
CTTTTTTTTCCTCCTTCTTCCTTTTTTTTTCTCTCCCCTTTTTCTACCCC
TCCCCTTTACTCTCTACATCCTCTTCCTATTCTACCCCCTTTCTCCCTTT
CTTCCTTCTTTTTCTTTTCCTCTCTCTTCCTTACCCCCTTTTTTTCCCTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_a01.b1 MSMg01no442_a01.b1 CHROMAT_FILE:
MSMg01no442_a01.b1 PHD_FILE: MSMg01no442_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:59 2005
         (419 letters)



>mm_chr11_87165898_87166716
          Length = 819

 Score =  756 bits (391), Expect = 0.0
 Identities = 412/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgaatatagtttattgcaaggacaaggtatagattaaaaccagcccaaggaagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actatgaatatagtttattgcaaggacaaggtatagattaaaaccagcccaaggaagagg 560

                                                                       
Query: 61  tgtactctacaaaagcagcagaagtcaagagtgtcctatgctcaggagtacatcatccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtactctacaaaagcagcagaagtcaagagtgtcctatgctcaggagtacatcatccag 500

                                                                       
Query: 121 tgcaaatatgtggcgcagtgctcagagtatgacattctgagtcccacccaagtcccagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcaaatatgtggcgcagtgctcagagtatgacattctgagtcccacccaagtcccagtt 440

                                                                       
Query: 181 ttcagaattctcactggcatctacacttaggactatctctgatgtaatcagagattttgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 439 ttcagaattctcactggcatctacacttaggactatctctgatgtaatcagagattctgg 380

                                                                       
Query: 241 ttacgttcctcctcagacctgaggacaaagctggacctttctttaggcaaagccgagctg 300
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agacgttcctcctcagacccgaggacaaagctggacctttctttaggcaaagccgagctg 320

                                                                       
Query: 301 taggtagtgagactttgtatccctctccccatccacttctagcaactacacagctatagc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagggagtgagactttgtatccctctccccatccacttctagcaactacacagctatagc 260

                                                                      
Query: 361 agactacgacagtgtgcatatcttattctctctttaatatctgcatttccggggtgggt 419
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agactaagacagtgtgcatatcttattctctctttaatatctgcatttccggggtgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no442_a01.g1 MSMg01no442_a01.g1 CHROMAT_FILE:
MSMg01no442_a01.g1 PHD_FILE: MSMg01no442_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:59 2005
         (233 letters)



>mm_chr11_86998735_86999367
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagtggattttgtttgtttttagttaagattaggagtccagagtagattttctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagtggattttgtttgtttttagttaagattaggagtccagagtagattttctgtgg 260

                                                                       
Query: 61  ctgttgcttttaagatgggagacttgggttttatgtttcattttactcaatgtgtcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttgcttttaagatgggagacttgggttttatgtttcattttactcaatgtgtcaaag 320

                                                                       
Query: 121 tacaactgccttagtctatgagccctattttctttctttaattaatcagtgcataatgtc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 321 tacaactgccttagtctatgagccctattttctttttttaattaatcagtgcataatgtt 380

                                                                
Query: 181 atcaatctttcaatggtctgagacagtggagcctgactgccctggaactcagt 233
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaatctttcagtggtctgagacagtggagcctgactgccctggaactcagt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)