BAC Information

Click to search

BAC

Clone NameMSMg01-443A23
Chromosome11 (Build37)
Map Location 71,159,042 - 71,159,460
singlet/doubletsinglet
Overlap genenone
Upstream geneAlox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A23.T7 (MSMg01no443_a23.b1)MSMg01-443A23.TJ (MSMg01no443_a23.g1)
ACCAG532557AG532558
length756747
length of high quality
(start - end)
251 (73 - 323)419 (77 - 495)
definitionCHROMAT_FILE: MSMg01no443_a23.b1 PHD_FILE: MSMg01no443_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:32 2005CHROMAT_FILE: MSMg01no443_a23.g1 PHD_FILE: MSMg01no443_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCATGGTGTCANGTACTACNNGNNNNNNTNTTTTCAGAGGACCGCGG
AATTCTTCTGAATTTCATACAAGACTTCTACTCACAAAATCGGTCTCAAG
CCTTCAAGACTGACTAATTTTTTATAGCCATAGATACTTAGAAACAACCT
AAAATGACCAAGAATAGGAAAATGATCCAACTGGCTGTGTTATTCTATGT
AGGTATTTTCATAAGACTATTGAGAATGATACTGTACTAAACATTTGGTT
CTAGGAAAAGACAGCCTTGATTCACTAAGAAAACAAATGTGAATATAATA
TAACAGATAAAGTGTGACTCTTTTTTCCCATAGTCNAGTATACCAAGAAT
ACATTAAAGGATATAACGCAATTTTGCCTTTATGCTGAGGATCAAATCCA
GGGTCTTGTGCTTGCCACAAGCGGTGNTTTGAACGAGCTGCCACCCTGAC
TCATGGACCTTTCAACGCTTGTTCAAGTCCTGGTGTTCTTAAGGAGCGCT
AGTGAGCGTGCTCTTTTGTGTTAAATTATTTTCCTGGGGACCAACTTTTT
GATTCTTAGTCTTTGATCCCGACTAATCACCTTCCTTTTCTTGGCTGAAG
AAACCTTGCGGTACCCCCTAAAGGGTGGTTGGCACCATGACCTGCTCTTA
ATAAGTGATAGAGCGCCCCCCCCCGCCCAAGAGAGGGTGTAGAGCAAACC
CACGCTAGAGCTCCCCCCACTTGGTTAACCCTTTCCTCTTCCTTCCGAGA
TTCCCG
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCACTTGCCTCCCATGACTTAGTCT
TCCACTTAGCACCTCTTACTGGGCAGAAGTCACAACTTGGAGCTAATCCC
AGGCCCTCCTGAAGTTAAATCCTCTTGTTTTGATGAGCATCTACAGAGCT
GGATGCACACCTCTTTTTTTTCCTAGTTCAAAAGCCTCCACATGAAGGGG
ATGGGGACAGGCTGAGTGCAATGGACATAGGGTATCCTGAGGGGCTCAGA
CATCCTCAATGTGATACCAGGAAAGTGTGAGGTTCTTGTCCCCTGCTTCC
TAGCTGCCTTTAGAAGTGACTGAAGGAGTGACAGGATAAGCCAGCTAGAG
GCAGAGGTGTTGACTGATCATGCTGGAGGCACACTGCTCAACACATGGGA
AATAGCACTATGCATACGGCTCATCCATCTTCAGAGTGGCCCAGAAACCA
GCAGCCCTCATCTATAANGCTGGAGTGGCTGGCCCAGTATTTGGAAAATA
TTGTGAAGTTCAAGTGAGCTGGTCCTACCAAGGGTCTGGGCAGGTAACTG
ATCCAACTTGACAAGTGCTAGGTGAAGTGGAAACTTCTAGTTTCCTTGGA
AAGTAGTCATGTCAAATGATGTTTTGTTGGGCCACACAGGTGAAAGAAGG
CTTGGCCATTATAACCATGTAAAGAAGCTTTTTTGGAGCTTAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a23.g1 MSMg01no443_a23.g1 CHROMAT_FILE:
MSMg01no443_a23.g1 PHD_FILE: MSMg01no443_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:32 2005
         (419 letters)



>mm_chr11_71158842_71159660
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgcctcccatgacttagtcttccacttagcacctcttactgggcagaagtcacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cacttgcctcccatgacttagtcttccacttagcacctcttactgggcagaagtcacaac 560

                                                                       
Query: 61  ttggagctaatcccaggccctcctgaagttaaatcctcttgttttgatgagcatctacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttggagctaatcccaggccctcctgaagttaaatcctcttgttttgatgagcatctacag 500

                                                                       
Query: 121 agctggatgcacacctcttttttttcctagttcaaaagcctccacatgaaggggatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agctggatgcacacctcttttttttcctagttcaaaagcctccacatgaaggggatgggg 440

                                                                       
Query: 181 acaggctgagtgcaatggacatagggtatcctgaggggctcagacatcctcaatgtgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaggctgagtgcaatggacatagggtatcctgaggggctcagacatcctcaatgtgata 380

                                                                       
Query: 241 ccaggaaagtgtgaggttcttgtcccctgcttcctagctgcctttagaagtgactgaagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggaaagcgtgaggttcttgtcccctgcttcctagctgcctttagaagtgactgaagg 320

                                                                       
Query: 301 agtgacaggataagccagctagaggcagaggtgttgactgatcatgctggaggcacactg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 agtgacaggataagccagctagaggcagaggtattgactgatcatgctggaggcacactg 260

                                                                      
Query: 361 ctcaacacatgggaaatagcactatgcatacggctcatccatcttcagagtggcccaga 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctcaacacatgggaaatagcactatgcatacggctcatccatcttcagagtggcccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)