BAC Information

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BAC

Clone NameMSMg01-443E05
Chromosome11 (Build37)
Map Location 106,720,275 - 106,720,463
singlet/doubletsinglet
Overlap geneSmurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443E05.T7 (MSMg01no443_e05.b1)MSMg01-443E05.TJ (MSMg01no443_e05.g1)
ACCAG532711AG532712
length753729
length of high quality
(start - end)
192 (129 - 320)---
definitionCHROMAT_FILE: MSMg01no443_e05.b1 PHD_FILE: MSMg01no443_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005CHROMAT_FILE: MSMg01no443_e05.g1 PHD_FILE: MSMg01no443_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTTCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACGTATCGAG
GGGCGGAANNCANCTATTACAATACCAAGTATGACATACTTCATCAATCA
TCCTATTAAAGTTCTCAAAAGTTAACTAAATGAAGTTTACAACATCAGTT
AGCAGAAAAATGAGGACCAGAACCCAGGTGGTCACTATACATTGCCTTTG
CTGCCACAGGAAAGTATAAATAACATCGCCGTGTGAATTGCTTGACACAA
ATATACTTCACTAAATGTCATAATGTTACAATTGCTATTACTCAATTCTC
CTTTCCTTGACTCTAAATATTTATAATATATTCAAATTCAGTTCTGGCAC
ACTCTGTTCTAGATAATTACAGACCAACCTTTTTCTTTAAAAAAAATAAA
TTTACCCTGCGTAGGGTAATGGTAGGGAGCTGACGTAGGAGCGGTCGTGT
AGGCGCCAATATATGTTGATATATGCAGGCCCGAGCGAATGTCCCTAGCT
TTTTCTTTTCCCTTCCTTTTTCCTCCTCCCCCTTCTTCCCCTTTTTTTTT
TTTCCCCCTCCTTTTTTTCCCCTCCTTTTTTCCCCCATCCCTTTTCCTAC
TTATTATCCCTTTTTTTTACCCCCCTTTTTCTTTTTTTTTTTTTTACCAA
CCCCGCTTTTTTCTTTTTTTTTCTTTTCCCCCCTCTTTCTTTTCCTTTTC
TTTATCCCCCTTTTTTTCTCCCACTATCCCCTCTCCTTTCTTTCCATTCC
TCN
CCTAACATGCAGTGGGAGGCCGGCGGCGCCTGGTTCGAACGCGGGNGAAC
NANAGAAGTAACGCGACGGCGCGGGNCNNCCCCNNCNCCCCNNGAAGCNG
GGANGGCATTCCGCGCCACCAAGCCAGGGAAGGCCCNCCNNAAGCANCGG
CAAAACTCCTGCCCGGAGGGCGCAAGGACCCCACCCAAGCAGNGAGCCCC
NCAGCTGCCACAAACTAAACCCCACAGCNGGNANGAAGGCTTTTTCGGGC
TGAGGAGCTAGCACAGCTGTGGCGCTCATAGCGCTCTCATTTCTGCGAGA
CAAGATTTTTTTTTTTTTNGAAAGAGCGGCAGCGCGCCGGCGCGGNCGNC
CTGTTTTACCACCCTACCGTATTTGATTTCCTCGAGGCACAGAGTATTCA
ACGGTCCACCCTTTTTACCAGCCGCCCCCCCATTTTGCCCTTATTTGTCC
CACATTTCCCTGTTTCCCCCGCTTTTCTTCCGTTCCCCTCTCCTCAGCTC
CCTCCCATTTTCCTCTTTACCCACTTGCTTTTCTCTTATTCCCCCCCCTC
CTTATCTTTTCCCTCTCTTCCGCTTCCAACGCTCTTCGTCCATTTATCCC
CTCCCCCCTGTCCCCCATTCTTCTTTCACCCCCCCCATCCTTTTCTCTTT
TTCCTTCTTTTAATTAATGCACACCATTTACCCCTTTTACCCCTCTTTTT
TATTCCTCTGTTATCCCCTCTCTTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_e05.b1 MSMg01no443_e05.b1 CHROMAT_FILE:
MSMg01no443_e05.b1 PHD_FILE: MSMg01no443_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:49 2005
         (192 letters)



>mm_chr11_106720075_106720666
          Length = 592

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaagtttacaacatcagttagcagaaaaatgaggaccagaacccaggtggtcactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaagtttacaacatcagttagcagaaaaatgaggaccagaacccaggtggtcactat 260

                                                                       
Query: 61  acattgcctttgctgccacaggaaagtataaataacatcgccgtgtgaattgcttgacac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 acattgcctttgctgccacaggaaagtataaataacatcaccgtgtgaattgcttgacac 320

                                                                       
Query: 121 aaatatacttcactaaatgtcataatgttacaattgctattactcaattctcctttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatacttcactaaatgtcataatgttacaattgctattactcaattctcctttcctt 380

                    
Query: 181 gactctaaa 189
           |||||||||
Sbjct: 381 gactctaaa 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)