BAC Information

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BAC

Clone NameMSMg01-443K04
Chromosome11 (Build37)
Map Location 89,533,869 - 89,650,720
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K04.T7 (MSMg01no443_k04.b1)MSMg01-443K04.TJ (MSMg01no443_k04.g1)
ACCAG532995AG532996
length734721
length of high quality
(start - end)
211 (76 - 286)193 (133 - 325)
definitionCHROMAT_FILE: MSMg01no443_k04.b1 PHD_FILE: MSMg01no443_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:17 2005CHROMAT_FILE: MSMg01no443_k04.g1 PHD_FILE: MSMg01no443_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,650,511 - 89,650,720)(89,533,869 - 89,534,060)
sequence
CTATCTCATATTTGCGGCGCTATACGAATACTATATTTCGAAAACCCGCG
GATTCCTTCCATTTCTCAACACAGGGAGTGCTAATACCAGTGATGGGCTA
CACTATAAGCTGGCTTATTGGCCATTGGGGACCGGCCAGTTTATCAAGAG
AGGATCTTAATGTTCACCTCATCCATTGGGCTTCTCTATTAATCCAACCA
ACACTACCACTCAGAGAACATTGGAAGAGGGCATCATAAAGAATACAAGA
GCTATGAAGGATCTCTGTGAAATGCTGTCTTGTGGTCAAGGTGATCACAC
ACATGGACACACAGCACATGTTTTTTTTGCTCAAATCCTACCTGATATCC
AGCCAGATAAATTCTGCAATAGGCGGTTGAGTGATCCCCAGCGCCCCACT
TTCCCGTTGGATGTTGTTTTTGCTTTCTATACTTCCCCTTGTATGATTTA
AAACCCCCCCTTTATTGGTGCAAATGCTTATCTATTCCTCCCCCCCCCAT
GTTTCCCCTTTTTTCCTTTTCTTCATCTTCATCTCCGTTGTTTTCTTCCT
GTTTACATAAAGTGCTTCTTTTCATATCCCCCCTTTTTTCTTCTCCTTTT
TTTATTATTCCCCTCCACACCTACCCCTTAAATTTTCTGTTACTTTTTCC
CCTATCCGCCTTTCCCCTCCCACCTTTTTTTTTCCCTATTTCTCTTTTAC
ACTCCCTTATATTTCCCTTCTTCTCTTTTTCCCN
TTTCCTCCCATGATGTGCTTAGGTCTGGNGGNCGCCTGGCCGTCCNAAAA
GAGGGTGAACTANAGAAGGAATCCCAGAATTCCCGAGCTCATAGCCATCA
AATCCAAACTTTAAACTTGAGTAGCATTTACATCTGTCTCACAAAGTCCA
AAGTATTTATTACAGGGATCACCCTCTTCAGGAATTTAAACAATGTTCAG
ACCAAGGGAAAAATTCTCTACCAGGGTTTTAAGCTCTTCTTTCCCCTCTC
TCCAGCTGGCTAGCAAAACCTGACATGAAAACAAGTGAAACAAGTGGACC
CCATTCTCCCCTCCCCTCCCTCAGTCCCACATTCTTGAGCAAGCCTCCTT
AACCACTCCTCAGCCAATCACATGGATTTACATCATTTACACACTCACAT
GTGCATTTGTATGCATGTGCACACCCACCCCCCTTATAGGTTTATAGTCT
AGGGTTAAGAAATTCACCCTTCCCTTTTTTTTCCTCCCTTTCGTCTTCTC
TACCCCTCTTCCCCCCCATGTTCCTCCACTTCTATTCCCCCTCTTTTTAT
TTTTTCTCGTTTACTCCCTTTCCAACCATTTTTCCCAACCCCGCCCTATC
ACCCTTTATCTTCTCCCCCCCCTTTCTCTTTTTTTTCTTCCCCCCCATAT
TCCCACTCCCTTCCCTTCTACATTTCTCTTTTTTTTATTTCCATCCCCCT
ATTCTCTTTTCCTTTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k04.b1 MSMg01no443_k04.b1 CHROMAT_FILE:
MSMg01no443_k04.b1 PHD_FILE: MSMg01no443_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:17 2005
         (211 letters)



>mm_chr11_89650387_89650997
          Length = 611

 Score =  375 bits (194), Expect = e-109
 Identities = 206/210 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtgctaataccagtgatgggctacactataagctggcttattggccattggggaccgg 60
           ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 334 gagtgctaataccagtgatgggctacactataagctggcttaaaggctattggggaccgg 275

                                                                       
Query: 61  ccagtttatcaagagaggatcttaatgttcacctcatccattgggcttctctattaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccagtttatcaagagaggatcttaatgttcacctcatccattgggcttctctattaatcc 215

                                                                       
Query: 121 aaccaacactaccactcagagaacattggaagagggcatcataaagaatacaagagctat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 214 aaccaacactaccactcagagaacattggaagagggcatcagaaagaatacaagagctat 155

                                         
Query: 181 gaaggatctctgtgaaatgctgtcttgtgg 210
           ||||||||||||||||||||||||||||||
Sbjct: 154 gaaggatctctgtgaaatgctgtcttgtgg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_k04.g1 MSMg01no443_k04.g1 CHROMAT_FILE:
MSMg01no443_k04.g1 PHD_FILE: MSMg01no443_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:18 2005
         (193 letters)



>mm_chr11_89533669_89534261
          Length = 593

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtctcacaaagtccaaagtatttattacagggatcaccctcttcaggaatttaaaca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tctgtctcacaaagtccaaagtatttattacagggatcacccacttcaggaatttaaaca 260

                                                                       
Query: 61  atgttcagaccaagggaaaaattctctaccagggttttaagctcttctttcccctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttcagaccaagggaaaaattctctaccagggttttaagctcttctttcccctctctc 320

                                                                       
Query: 121 cagctggctagcaaaacctgacatgaaaacaagtgaaacaagtggaccccattctcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctggctagcaaaacctgacatgaaaacaagtgaaacaagtggaccccattctcccct 380

                       
Query: 181 cccctccctcag 192
           ||||||||||||
Sbjct: 381 cccctccctcag 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)