BAC Information

Click to search

BAC

Clone NameMSMg01-444A06
Chromosome11 (Build37)
Map Location 51,236,982 - 51,237,219
singlet/doubletsinglet
Overlap geneCol23a1
Upstream geneRufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A06.T7 (MSMg01no444_a06.b1)MSMg01-444A06.TJ (MSMg01no444_a06.g1)
ACCAG533283AG533284
length787729
length of high quality
(start - end)
312 (44 - 355)239 (81 - 319)
definitionCHROMAT_FILE: MSMg01no444_a06.b1 PHD_FILE: MSMg01no444_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:47 2005CHROMAT_FILE: MSMg01no444_a06.g1 PHD_FILE: MSMg01no444_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCCTAGTTACCACCATTATCGGGGTGTAATAGTGGGGTGATGGGCA
AGCAACAAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGC
TGCGGGTTATAAAAGCAGCACCATTTTCCCGGTTCGGGATCTTCCTGAGA
AGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCTTT
CTTGCCGGTCGAGCGGGACGCAATAAAATTCCATTTGCTTGGGGTGACAG
AGGATCACAGACAATCATATATGATGCACATTTATTTTGCTGTGTGCAAT
GGAGGCCCGTGGTAATGGAGATCCCCACACTGTGTGCTCTGCTCTGTGCT
CATGATGGACAGGTCAGCTGATGCTGTTCTCTAGAGAACCTGAATACGGA
ACACTGACCTTTCTTTCCCGGTACATGTTTTCCTCGCCGATCGGACTCCC
TTATCTCGCTCTGGGTCCTCTGTATAATCGATATTTTTTTGATTTTCCTC
GCCGTCTTTCTTTTCACCTCTTACTTCTCTGGCTAACCCTTTCCGCCCCT
TCTACATTGAGTTAATCCGTTCTCTTTTTTCCCCCCCCTTCCCGTTCTCT
ACCTTTTTTCCTCCGTCCCCCTTCCCCAACACGGTTATATACGGTGTTTT
TTCCTCCCGTTCCTTCGACGCCCTCTTTGTGCGCTTTCGTTCCCCCCTTC
TCCTGTCGCCTTTCCTGTCCCTTTACTTTCCCACTCT
GTAATNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGG
GAGGTGAACTATAGAATGACAGCGGAGATCAGCCTGACCAGGCCTGCCTG
CTTTATCTCCTGCATCATACTCCACTCTTTTCTCTGTACCCCACAAAGGA
AAGGGTCTTTTCTTCCTTTATCTATAGAGATAGTCACTGTTTGGTAGACC
TAAGCCCTGCGGTTATCCAGGTGCAGGGTCCCCATGGTTTTAGCTAACCC
CTCTCCCCCATCTTCCTGGTCTCTGAGAACTGTCAATCCACCTCTACTGT
TGTTTCAGTTTGCTTCCTTTTTTTATGTCCACATGGCCCTCTCTTTCTAT
ACCATGCTCCATTTTTCCCCATTGCCTACTGAGCACTGTCCAGGTATCTC
AGACTCCCTTCAAAGGGTCTATAAAAGGGCTTTAATTTCCTTTTATTTTT
ATCCCCTGCCCTGGCTTTAACCCCAATATTCACTTCATGACTTCCCGGGC
TCAAACTCTGTTCCTGGTCCCCCTCCAGGCTTTCTCCTTCCTCACTTCCT
GACCAGGCATGTTGTAGAGTTAGCGTTCCACACCTGCTTTCCATGAGACG
TGTTCTGTCCACTCATGTTTCTTCCGTTTTTCCTCTTCTACCGCGGGTCT
TTTTGACTTTTTTTCGTGGTGCACTTCGGCCCCCCGCGTGCTTTCCTTAA
TGCGCCGCGACCCATATCTCTGTGCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a06.g1 MSMg01no444_a06.g1 CHROMAT_FILE:
MSMg01no444_a06.g1 PHD_FILE: MSMg01no444_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:47 2005
         (239 letters)



>mm_chr11_51236782_51237420
          Length = 639

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctgaccaggcctgcctgctttatctcctgcatcatactccactcttttctctgtacc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 438 agcctgaccaggcctgcctgctttatctcctgcatcataccccactcttttctctgtacc 379

                                                                       
Query: 61  ccacaaaggaaagggtcttttcttcctttatctatagagatagtcactgtttggtagacc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 ccacaaaggaaagggtcttttcttcctttttctatagagatagtcactgtttggtagacc 319

                                                                       
Query: 121 taagccctgcggttatccaggtgcagggtccccatggttttagctaacccctctccccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taagccctgcggttatccaggtgcagggtccccatggttttagctaacccctctccccca 259

                                                                     
Query: 181 tcttcctggtctctgagaactgtcaatccacctctactgttgtttcagtttgcttcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 tcttcctggtctctgagaactgtcaatccacctctactgttgtttcagtttgcctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)