BAC Information

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BAC

Clone NameMSMg01-444H13
Chromosome11 (Build37)
Map Location 40,237,901 - 40,378,501
singlet/doubletdoublet
Overlap geneLOC100039241
Upstream genenone
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444H13.T7 (MSMg01no444_h13.b1)MSMg01-444H13.TJ (MSMg01no444_h13.g1)
ACCAG533630AG533631
length740749
length of high quality
(start - end)
244 (78 - 321)504 (68 - 571)
definitionCHROMAT_FILE: MSMg01no444_h13.b1 PHD_FILE: MSMg01no444_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:23 2005CHROMAT_FILE: MSMg01no444_h13.g1 PHD_FILE: MSMg01no444_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,237,901 - 40,238,144)(40,378,187 - 40,378,501)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAAAACACGCG
GAATCAGAAACATATTACTAAAAACTATCTTCTGCACATCCTCCCTCATC
GAGGCACAGTGAATTTGCTTTCAGCCACTAAAGAAGAGTGGCCAAGCAAA
GTAGAGAGACAGAATCAGGCTTGCTATCTCCGCTAGGAGCACAGTCAATT
AAATGCAGCCTGGAAGGAATCTAATCTAATATCAAAGATGCTGTCAGGGG
ATCAGTTCCCCAGAGTTTAGGGTTAATGATGTAAAGCAAGGCAGTCTGGC
CAAAAGCAGGGGGAAGAAATCTTACTAGTTCAGGTATGACTGGAAGAGAC
TAAAATAAAATAATATTTTATAAAATAAAATAAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAGCACTTCCCAGAATAAT
GGAGGGCCTCAGGCAAAACTTTCTGCAGACAGGTGACAATACCAGGTCCT
TGAAGCAGTCATCCAGGGGTTGGGTTCCCTAACATTTAGCAAGCTTTACA
GTCAATCCTATAATCAGCATTGAGGATTATCAGTGTTTTAATATAGAAGA
CTCCTAAGTGAGACCTAGTCTCCAACCAGAGCGCAACTGGGCGCGCCAAA
TTACCCTTGTTGTACTTGGCACACGATCTCTGACACGTAGGTCCCTAGTA
AAATGCGCCCCGGAATCAAGGGCTTGTTCCTTGTCCACCA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCGAAATTCTTTTTCTTCCCCCAAGACAGGCTGTCTCA
GTAAAACCAGCCCTGGCTGTCCTGGACTCTCTTTGTAGACCAAGTTGGTC
TTCAATTCACAATGACCCACCTGCCTTTGCCTCCAGAGTGCTGTACTCAA
AGGTGTGAACCATCACACACAGCTTATAGAGGAATTCTAAATTATAATTT
GCATAAGAATTGAAGGCTGTGTTAGGCAGAGTGGCACATGCCTGCAAACC
CAGCCCTTGTGATGCTGGTTCAGAAAGATTGTGAGTTTGCTGTGTATGGT
GGTGTACACCTTTAATCCCAGCACCGAGGAGGTAGTGGGAGGTGGATCTC
TACATGTTCAAGGTCAGTGTGGTCTACATAGTAAGATCCTGTCTCAAAAA
ACTAAATAGAAATAAAGAAGCTTTATGAGTTGGAGCTTGGCATAACCTAT
ATAATGAGATACATACACACATGCACATGCCCACACACACCCACAGAAGG
GGTGGGAGAGAAAGAGGGAGTGAGCGTCCCTTTTTTTTCTCCTTCCCCCC
CTTTTTTTGCCCCCCCTCCCCTTCTCCCGCTTTTTTTGNCTCCTTTTTTT
TTTTTTCTTCTCCTTCCCCCCCTCCTTTTTTCTTTTCCCCCCTTCTCCTT
TTTTATTTTTCTTTTTTCCTCTCCCTTATTTTTTCACCTACTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_h13.b1 MSMg01no444_h13.b1 CHROMAT_FILE:
MSMg01no444_h13.b1 PHD_FILE: MSMg01no444_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
         (244 letters)



>mm_chr11_40237701_40238344
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgcacatcctccctcatcgaggcacagtgaatttgctttcagccactaaagaaga 60
           |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||
Sbjct: 201 tcttctgcacatcctccctcatcgaggcacagtgaatttgcaagcagctactaaagaaga 260

                                                                       
Query: 61  gtggccaagcaaagtagagagacagaatcaggcttgctatctccgctaggagcacagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggccaagcaaagtagagagacagaatcaggcttgctatctccgctaggagcacagtca 320

                                                                       
Query: 121 attaaatgcagcctggaaggaatctaatctaatatcaaagatgctgtcaggggatcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaatgcagcctggaaggaatctaatctaatatcaaagatgctgtcaggggatcagtt 380

                                                                       
Query: 181 ccccagagtttagggttaatgatgtaaagcaaggcagtctggccaaaagcagggggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccagagtttagggttaatgatgtaaagcaaggcagtctggccaaaagcagggggaaga 440

               
Query: 241 aatc 244
           ||||
Sbjct: 441 aatc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no444_h13.g1 MSMg01no444_h13.g1 CHROMAT_FILE:
MSMg01no444_h13.g1 PHD_FILE: MSMg01no444_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
         (504 letters)



>mm_chr11_40377598_40378501
          Length = 904

 Score =  563 bits (291), Expect = e-164
 Identities = 309/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 189 agaattgaaggctgtgttaggcagagtggcacatgcctgcaaacccagcccttgtgatgc 248
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 904 agaattgaaggctgtgttaggcatagtggcacatgcctgcaaacccagcccttgggatgc 845

                                                                       
Query: 249 tggttcagaaagattgtgagtttgctgtgtatggtggtgtacacctttaatcccagcacc 308
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tggagcagaaagattgtgagtttgctgtgtatggtggtgtacacctttaatcccagcacc 785

                                                                       
Query: 309 gaggaggtagtgggaggtggatctctacatgttcaaggtcagtgtggtctacatagtaag 368
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaggaggtagtggcaggtggatctctacatgttcaaggtcagtgtggtctacatagtaag 725

                                                                       
Query: 369 atcctgtctcaaaaaactaaatagaaataaagaagctttatgagttggagcttggcataa 428
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 724 atcctgtctcaaaaaactaaatagaaataaagaagcattatgagttggagcttggcataa 665

                                                                       
Query: 429 cctatataatgagatacatacacacatgcacatgcccacacacacccacagaaggggtgg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctatataatgagatacatacacacatgcacatgcccacacacacccacagaaggggtgg 605

                          
Query: 489 gagagaaagagggag 503
           |||||||||||||||
Sbjct: 604 gagagaaagagggag 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)