BAC Information

Click to search

BAC

Clone NameMSMg01-445I05
Chromosome11 (Build37)
Map Location 26,045,726 - 26,046,147
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I05.T7 (MSMg01no445_i05.b1)MSMg01-445I05.TJ (MSMg01no445_i05.g1)
ACCAG534426AG534427
length804745
length of high quality
(start - end)
218 (64 - 281)425 (70 - 494)
definitionCHROMAT_FILE: MSMg01no445_i05.b1 PHD_FILE: MSMg01no445_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:44 2005CHROMAT_FILE: MSMg01no445_i05.g1 PHD_FILE: MSMg01no445_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAAGCTCGCGGAATTCATC
ATTATTAGCAATTTATTTATTATTTTTTGTTGTTTTGTTTTTGTTTGTTT
GTTTTTTTGAGACCCGGTTTCTCTGTGTAGTCCTCGGCTGTCCTGGAACT
GACTCTGTATACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGC
CTCCCAAGTGCTGGGATTAATTGCATGAGCCACCACGTTTTTTTGAACTT
TATTTTTTATTCTATGGTTTGTCTGATGCTGTGTTTACATTCCCACGCCG
CTATTTTCACTACTTTTAGCACAGNAGGAACACTCACACCGGCCCGCCGG
TTTTTTTTACCCCCCCCCACAGGTAAGAGGGTGAATTTATTTTTTACCTC
ATGCCCCTCATTTCCCCTTTTCTTTAGTAGACCCTGACTCCCCCATCCTT
TTCCCCCCCAGATATAGTATTTCTATTCCAGCGCTATGCCTTCTCCTTTC
CCCACAACACTATTTGCCCGTTTCCCCTTTACCCTTTCCCCCCTCACCTT
TGTGTTTTTGTCCCCTCTCCCCATGCCCCCCCTTCATTTACTCATATCTC
CTCTCTTCTTTTCCTCCTTTACCCTCCTTCCCTTACCCTTCTTCCTTTAT
ATTTCCCCCCCTTTTTCTATTCCCCCCCTCCTTTTTTTTTCTTTTTTTCC
CCGCCTATCGATTCTTCCCACCCTCCGCTACTCTATCCCTACTCTTCTGT
CTTCTCCCCCTCTCCCCCTTTTCACCCATTTCCCCCACCCCATCTTCCTC
TTTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATCTGAGCAAAACCTAGAAGGCACAAAAC
CCATGTATTAGAAGACAGAACATTGCAGGTCTAGATTCCGAGGAGACAGC
AAGTGTGTGTTCAACAACAACAGAGAAGAGAAAATCAGGGAGCAGAAATG
ATGAGGGAGGCCGGAAGAGAGAGAGGCAGGCCACAGTAAGGACTTAGCAG
TGCGTGATGACATAGGAAAGAAATGAAATGGCCTGAGTATTTATATTCCT
AATTATTTTGACGTGCATTTATATGTGCTGTTTACATCATTCTCCCTCCT
CCCGCTATCCTCTCCTGTGTTGCTATCTGCCTCTTCTTAAATTCATGGAT
AATCTAAATTGTGAATGAATTACTTTTTTAAGAACAAGAGATCAAGGAAT
AGAGCCCAAGAGAAAGAAAGACACTGTGGTCTAGCTGAGGCCNTNTTNTT
TTATTATATNAATTAAAACATGGGACACAGTGGTCGAGGAAATTACAGCA
AGTGGTTGTATTCACAAAATATCTTGAACACCAAGCCATTTACGTGCTCC
TACATTAAGGATGGGGATCTTGGTGTGGAAAATGCGAAAGTTTTCTTTTG
GTGGGTTTCTCTAGGGAAGAATTTTGAGTTACCAAATTCGCTCTTGGGTG
ACTAACTCCGGCATATTCTTTTATTTTTTTTGGTCCCCTGCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i05.g1 MSMg01no445_i05.g1 CHROMAT_FILE:
MSMg01no445_i05.g1 PHD_FILE: MSMg01no445_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:44 2005
         (425 letters)



>mm_chr11_26045526_26046350
          Length = 825

 Score =  733 bits (379), Expect = 0.0
 Identities = 412/423 (97%), Gaps = 2/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctgagcaaaacctagaaggcacaaaacccatgtattagaagacagaacattgcagg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaatctgagcaaaacctagaaggcacaaaacccatgcattagaagacagaacattgcagg 260

                                                                       
Query: 61  tctagattccgaggagacagcaagtgtgtgttcaacaacaacagagaagagaaaatcagg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tctagattctgaggagacagcaagtgtgtgttcaacaacaacagagaggagaaaatcagg 320

                                                                       
Query: 121 gagcagaaatgatgagggaggccggaagagagagaggcaggccacagtaaggacttagca 180
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcagaaatgatgagggagggcagaagagagagaggcaggccacagtaaggacttagca 380

                                                                       
Query: 181 gtgc-gtgatgacataggaaagaaatgaaatggcctgagtatttatattcctaattattt 239
           || | |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gt-ctgtgatggcataggaaagaaatgaaatggcctgagtgtttatattcctaattattt 439

                                                                       
Query: 240 tgacgtgcatttatatgtgctgtttacatcattctccctcctcccgctatcctctcctgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgacgtgcatttatatgtgctgtttacatcattctccctcctcccgctatcctctcctgt 499

                                                                       
Query: 300 gttgctatctgcctcttcttaaattcatggataatctaaattgtgaatgaattacttttt 359
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttgctgtctgcctcttcttaaattcatggataatctaaattgtgaatgaattacttttt 559

                                                                       
Query: 360 taagaacaagagatcaaggaatagagcccaagagaaagaaagacactgtggtctagctga 419
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taagaacaagagatcaaggattagagcccaagagaaagaaagacactgtggtctagctga 619

              
Query: 420 ggc 422
           |||
Sbjct: 620 ggc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)