BAC Information

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BAC

Clone NameMSMg01-445L19
Chromosome11 (Build37)
Map Location 58,768,201 - 58,922,889
singlet/doubletdoublet
Overlap geneHist3h2a, LOC382523, Trim17, Trim11, Obscn
Upstream geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb
Downstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L19.T7 (MSMg01no445_l19.b1)MSMg01-445L19.TJ (MSMg01no445_l19.g1)
ACCAG534597AG534598
length788684
length of high quality
(start - end)
167 (65 - 231)113 (83 - 195)
definitionCHROMAT_FILE: MSMg01no445_l19.b1 PHD_FILE: MSMg01no445_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:03 2005CHROMAT_FILE: MSMg01no445_l19.g1 PHD_FILE: MSMg01no445_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,768,201 - 58,768,367)(58,922,777 - 58,922,889)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
GTTATCCCCAGAAATCTTTTCTGTTTTTGCGTACTTTTGGTTATCAGTGG
AAGATGTCTGGTCGCGGCAAGCAGGGCGGCAAAGCTCGTGCAAAAGCGAA
GTCTCGTTCTTCCCGTGCCGGCCTGCAGTTTCCAGTGGGCCGTGTGCACC
GCCTTCTCCGTAAGGGTAATTATTCGGAGCGGGTGTTCGCTGGTGCCCCG
GTGTACCTGGCGTCTGTGCTAGAATATCTGACTGCTGAGATCCTGGAATT
GTTTGTTTTTGTTGTCCGCGACAATAATAAGACTCGAATCATCTCGCGCC
AACTGCAGATGGCCATCCGCTACGACGAGGTATTCATCTTACTGCTGGTC
CTATAGATTATTCGCGTAGTTTGTCGCCCTTGTACCAACATTCATTCTCG
TGCTTACTGTCTTTAGATTACCGAAATCATACCCACATGTACTTTTTCTT
TAGAGCTTTTCCCCTTTTTTTTGATATTTTGATAATTTTATCCGACAATT
CTCCTCCTTCCTATTTCAACCTTTCTCATTAAATTTTCCTCATATTATTT
TCTTTTACACATGATACATCTTATTCCCCTATTATTTGTTACATCTTTAA
TTTTATTCCAGACCTATTTTCCTATTGATCTTTTGTTTCTATCCCACCCT
CTTCTTTTTCACTTTTCCTATTTCCTATTTCTCTTTTATTTCCCTTCCTG
TTTTTTTTCTCCTCACTTTTTTTTTCTCCCTCCACATT
NTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAACCAAATAGTT
TCTCCCTTACTGTGAAAACCAGAATGACAGGAAACACCAGCTAACATCAC
AGTTCAGGAGAGAGATTTATTTTTTGAAACAGCAACAAGGCAAGTGTAGG
GAGAGCAGGAGTAGGTGTTACAGTTGTCAGTTAAGGGAAGCCCCCCAAGG
TAAAGGGGTGCAGGGGCGAAACCCTTGGGGGAAGGAACCCGCCTTGGAAA
CACAGAAAAAAAACTTTTGGGGCCTTTTGTTTTTTTTTGGGGCAAAAATA
AACCACCTTTGGGCATATCCTAATTTTTTTTCTCTTTCTTCCCAAAAAGG
GGGGGGAGCCGCGGTCGCCCAAAAAACAACAACCGTTCTGGTTGGTCCGA
GGTCACCCTATATACTAAGCGCACCCCTTTTTCGGGGCCCCTTGCTAGCT
CTTATCTCCCGTTCCCTCTCTCGCTATCGCTGTCGGGGCCCGGACCCCTC
CTCCTGATTTGCTCCCTCTTTTAAACTTCCTTCTTCCCCTTGTGCCTTGT
CTTCTTTCTTTCTTTGCCTCCCCCCTAGTTTCCTCTTCCCCATTCTGTGC
GTCTCCCCACTCCTCCTCCCCCTCCTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l19.b1 MSMg01no445_l19.b1 CHROMAT_FILE:
MSMg01no445_l19.b1 PHD_FILE: MSMg01no445_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:03 2005
         (167 letters)



>mm_chr11_58768001_58768567
          Length = 567

 Score =  315 bits (163), Expect = 7e-91
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttctgtttttgcgtacttttggttatcagtggaagatgtctggtcgcggcaagcag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcttttctgtttttgcgtacttttggttatcagtggaagatgtctggtcgtggcaagcag 260

                                                                       
Query: 61  ggcggcaaagctcgtgcaaaagcgaagtctcgttcttcccgtgccggcctgcagtttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcggcaaagctcgtgcaaaagcgaagtctcgttcttcccgtgccggcctgcagtttcca 320

                                                          
Query: 121 gtgggccgtgtgcaccgccttctccgtaagggtaattattcggagcg 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggccgtgtgcaccgccttctccgtaagggtaattattcggagcg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_l19.g1 MSMg01no445_l19.g1 CHROMAT_FILE:
MSMg01no445_l19.g1 PHD_FILE: MSMg01no445_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:03 2005
         (113 letters)



>mm_chr11_58922577_58923089
          Length = 513

 Score =  197 bits (102), Expect = 1e-55
 Identities = 111/114 (97%), Gaps = 2/114 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccc-aaccaaatagtttctcccttactgtgaaaaccagaatgacaggaaacaccagc 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttcccaaaccaaatagtttctcccttactgtgaaaaccagaatgacaggaaacaccagc 254

                                                                 
Query: 60  taacatcacagttcaggagagagatttattttttgaaacagcaacaaggcaagt 113
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 253 taacatcacacttcaggagagagatttattttt-gaaacagcaacaaggcaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)