BAC Information

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BAC

Clone NameMSMg01-446A24
Chromosome11 (Build37)
Map Location 13,151,544 - 13,224,514
singlet/doubletdoublet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446A24.T7 (MSMg01no446_a24.b1)MSMg01-446A24.TJ (MSMg01no446_a24.g1)
ACCAG534846AG534847
length727720
length of high quality
(start - end)
586 (60 - 645)546 (70 - 615)
definitionCHROMAT_FILE: MSMg01no446_a24.b1 PHD_FILE: MSMg01no446_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005CHROMAT_FILE: MSMg01no446_a24.g1 PHD_FILE: MSMg01no446_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,151,544 - 13,152,122)(13,223,966 - 13,224,514)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACTAAC
TATTCCGCCTCATCTAAACAGTGAGTTTCAAGCCAATGAAAAACCTGTGA
CAAAATAATACCTAAGACGTCTGTCTCTAATGTTTACACAAATGTACGCA
TGTGTGTATGTACACTTAAGAGTAAGTGTACGCACACATACACACACACA
CACACACACACACACACACACACACACACACACCAGGAAAATAGTTTAAA
TCCCAGGCTTGTTCCTAAATAAGGGATGTAGCATGCAGGTTCCTTAGATT
AAAGAAGTAATATTTTTAGTTAATTAGAAGGCAACAGGGCAGGCTTATTT
GTTATTTGCCAGATTCACACATATGGGAGAAGGGACTAAGGCTAATTAGG
CTATAGACACTTGGTCTAGCTGATATCTTTTTTTTTCCATTTTTTAATTA
GGTATTTAGCTCATTTATATTTCCAATGCTATACCAAAAGTCCCCCATAC
GACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCG
TTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTT
TCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTT
ATAGCTTCCAGGCACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTT
GCAGATCCCTTTAGCTTCCTGGGTACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCATATCCTAGTCAAATTGTTCTCTGATTA
GTCATTTTCCTTGACACACAAGTAGATATCACTTTCAAATGTGGGTGTTT
TCTTTCACCAACTAGTTTTACCTTCATTGTTTGGATTAAAGGTGATGCAT
ACTATGGGTACATCTGTATTCCAGGCAGAGAGAGTAAAGGCTGTGGCGAC
AATGTGTTTAGCACAATTAAAGGCTTAGTATATTAATTACACACAAAATT
ATGTCTCAGTCACAGGCTACCTTTTTCGTGAAATCCCTTCAGGCATAACT
TTTGCAGGTTTCCTGGTAGGGATTTTTTATTCCAGTTTTTCTGAGTTAAA
ACATATCTGTGGTAGCAGCTGTATTGGTAGCAGTCTCAGCAGAAAGTACA
GTCCATTAGTAAGAGAGACCCCATAGATTTTTCTTCAGGAGACTGGGGGT
TGGGGGTTAGCAGACGAATGATAAAATACTCCAGTTACCTTTATTTTCAA
ACTTTAACCAGCCCATCCACTTGTTCCAAAATGATTGTTAGTCTATCATA
TTTGCCTGTAATTTCCTGTATCTGTTCTGAAACCATTATTTTAAATAAAT
CCTTTACTCTGTACTAACTTTTGTTGCCTGTTAACTCCTGTACTACAAGA
AAGAAAGAAACTGGACATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_a24.b1 MSMg01no446_a24.b1 CHROMAT_FILE:
MSMg01no446_a24.b1 PHD_FILE: MSMg01no446_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
         (586 letters)



>mm_chr11_13151344_13152329
          Length = 986

 Score = 1023 bits (529), Expect = 0.0
 Identities = 569/591 (96%), Gaps = 17/591 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctaaacagtgagtttcaagccaatgaaaaacctgtgacaaaataatacctaagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctaaacagtgagtttcaagccaatgaaaaacctgtgacaaaataatacctaagacg 260

                                                                       
Query: 61  tctgtctctaatgtttacacaaatgtacgcatgtgtgtatgtacacttaagagtaagtgt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtctctaatgtttacacacatgtacgcatgtgtgtatgtacacttaagagtaagtgt 320

                                                                       
Query: 121 acgcacacatacacacacacacacacacacacacacacacacacacacacacaccaggaa 180
           ||||      ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 acgc------acacacacacacacacacacacacacacacacacacacatacaccaggaa 374

                                                                       
Query: 181 aatagtttaaatcccaggcttgttcctaaataagggatgtagcatgcaggttccttagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 aatagtttaaatcccaggcttgttcctaaataagggatgtagcatgcagtttccttagat 434

                                                                       
Query: 241 taaagaagtaata-----tttttagttaattagaaggcaacagggcaggcttatttgtta 295
           ||||||||||| |          |||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaagaagtaaaagaaag-----agttaattagaaggcaacagggcaggcttatttgtta 489

                                                                       
Query: 296 tttgccagattcacacatatgggagaagggactaaggctaattaggctatagacacttgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttgccagattcacacatatgggagaagggactaaggctaattaggctatagacacttgg 549

                                                                       
Query: 356 tctagctgatatctttttttttccattttttaattaggtatttagctcatttatatttcc 415
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 550 tctagctgatatcttttttttcccatttttt-attaggtatttagctcatttatatttcc 608

                                                                       
Query: 416 aatgctataccaaaagtcccccatacgacccacccccactcccctacccacccactcccc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatgctataccaaaagtcccccatacgacccacccccactcccctacccacccactcccc 668

                                                                       
Query: 476 ctttttggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctttttggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcc 728

                                                              
Query: 536 tctctttccagtgatggccgactaggccatcttttgatacatatgcagcta 586
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctctttccagtgatggccgactaggccatcttttgatacatatgcagcta 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no446_a24.g1 MSMg01no446_a24.g1 CHROMAT_FILE:
MSMg01no446_a24.g1 PHD_FILE: MSMg01no446_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
         (546 letters)



>mm_chr11_13223587_13224531
          Length = 945

 Score =  928 bits (480), Expect = 0.0
 Identities = 531/550 (96%), Gaps = 5/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatatccta----gtcaaattgttctctgattagtcattttccttgacacacaagtag 56
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agcatatcctagtccgtcaaattgttctctgattagtcattttccttgacacacaagtag 869

                                                                       
Query: 57  atatcactttcaaatgtgggtgttttctttcaccaactagttttaccttcattgtttgga 116
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acatcactttcaaatgtgggtgttttctttcaccaactagttttaccttcattgtttgga 809

                                                                       
Query: 117 ttaaaggtgatgcatactatgggtacatctgtattccaggcagagagagtaaaggctgtg 176
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctaaaggtgatgcatattatgggtacatctgtattccaggcagagagagtaaaggctgtg 749

                                                                       
Query: 177 gcgacaatgtgtttagcacaattaaaggcttagtatattaattacacacaaaattatgtc 236
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gctacaatgtgtttagcacaattaaaggcttagtatattaattacacacaaaattatgtc 689

                                                                       
Query: 237 tcagtcacaggctacctttttcgtgaaatcccttcaggcataacttttgcaggtttcctg 296
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcagtcacaggcaaccttttccgtgaaatcccttcaggcataacttttgcaggtttcctg 629

                                                                       
Query: 297 gtagggattttttattccagtttttctgagttaaaacatatctgtggtagcagctgtatt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtagggattttttattccagtttttctgagttaaaacatatctgtggtagcagctgtatt 569

                                                                       
Query: 357 ggtagcagtctcagcagaaagtacagtccattagtaagagagaccccatagatttttctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||
Sbjct: 568 ggtagcagtctcagcagaaagtacagtccattagtaagagagaccctgtagattattctt 509

                                                                       
Query: 417 caggagactgggggttgggggttagcagacgaatgataaaatactccagttacctttatt 476
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 508 caggagactggggggtgggggttagcagatgaatgataaaatactccagttacctttatt 449

                                                                       
Query: 477 ttcaaactttaaccagcccatccacttgttccaaaatgattgttagtctatcatatttgc 536
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 448 ttcaaactttaacaagcccatccacttgatccaaaatgattgttagtctatcata-ttac 390

                     
Query: 537 ctgtaatttc 546
           ||||||||||
Sbjct: 389 ctgtaatttc 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space:   501160
Effective search space used:   501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)