Query= MSMg01no446_a24.b1 MSMg01no446_a24.b1 CHROMAT_FILE:
MSMg01no446_a24.b1 PHD_FILE: MSMg01no446_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
(586 letters)
>mm_chr11_13151344_13152329
Length = 986
Score = 1023 bits (529), Expect = 0.0
Identities = 569/591 (96%), Gaps = 17/591 (2%)
Strand = Plus / Plus
Query: 1 tcatctaaacagtgagtttcaagccaatgaaaaacctgtgacaaaataatacctaagacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctaaacagtgagtttcaagccaatgaaaaacctgtgacaaaataatacctaagacg 260
Query: 61 tctgtctctaatgtttacacaaatgtacgcatgtgtgtatgtacacttaagagtaagtgt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtctctaatgtttacacacatgtacgcatgtgtgtatgtacacttaagagtaagtgt 320
Query: 121 acgcacacatacacacacacacacacacacacacacacacacacacacacacaccaggaa 180
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 acgc------acacacacacacacacacacacacacacacacacacacatacaccaggaa 374
Query: 181 aatagtttaaatcccaggcttgttcctaaataagggatgtagcatgcaggttccttagat 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 aatagtttaaatcccaggcttgttcctaaataagggatgtagcatgcagtttccttagat 434
Query: 241 taaagaagtaata-----tttttagttaattagaaggcaacagggcaggcttatttgtta 295
||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaagaagtaaaagaaag-----agttaattagaaggcaacagggcaggcttatttgtta 489
Query: 296 tttgccagattcacacatatgggagaagggactaaggctaattaggctatagacacttgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttgccagattcacacatatgggagaagggactaaggctaattaggctatagacacttgg 549
Query: 356 tctagctgatatctttttttttccattttttaattaggtatttagctcatttatatttcc 415
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 550 tctagctgatatcttttttttcccatttttt-attaggtatttagctcatttatatttcc 608
Query: 416 aatgctataccaaaagtcccccatacgacccacccccactcccctacccacccactcccc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatgctataccaaaagtcccccatacgacccacccccactcccctacccacccactcccc 668
Query: 476 ctttttggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctttttggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcc 728
Query: 536 tctctttccagtgatggccgactaggccatcttttgatacatatgcagcta 586
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctctttccagtgatggccgactaggccatcttttgatacatatgcagcta 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_a24.g1 MSMg01no446_a24.g1 CHROMAT_FILE:
MSMg01no446_a24.g1 PHD_FILE: MSMg01no446_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
(546 letters)
>mm_chr11_13223587_13224531
Length = 945
Score = 928 bits (480), Expect = 0.0
Identities = 531/550 (96%), Gaps = 5/550 (0%)
Strand = Plus / Minus
Query: 1 agcatatccta----gtcaaattgttctctgattagtcattttccttgacacacaagtag 56
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agcatatcctagtccgtcaaattgttctctgattagtcattttccttgacacacaagtag 869
Query: 57 atatcactttcaaatgtgggtgttttctttcaccaactagttttaccttcattgtttgga 116
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acatcactttcaaatgtgggtgttttctttcaccaactagttttaccttcattgtttgga 809
Query: 117 ttaaaggtgatgcatactatgggtacatctgtattccaggcagagagagtaaaggctgtg 176
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctaaaggtgatgcatattatgggtacatctgtattccaggcagagagagtaaaggctgtg 749
Query: 177 gcgacaatgtgtttagcacaattaaaggcttagtatattaattacacacaaaattatgtc 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gctacaatgtgtttagcacaattaaaggcttagtatattaattacacacaaaattatgtc 689
Query: 237 tcagtcacaggctacctttttcgtgaaatcccttcaggcataacttttgcaggtttcctg 296
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcagtcacaggcaaccttttccgtgaaatcccttcaggcataacttttgcaggtttcctg 629
Query: 297 gtagggattttttattccagtttttctgagttaaaacatatctgtggtagcagctgtatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtagggattttttattccagtttttctgagttaaaacatatctgtggtagcagctgtatt 569
Query: 357 ggtagcagtctcagcagaaagtacagtccattagtaagagagaccccatagatttttctt 416
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 568 ggtagcagtctcagcagaaagtacagtccattagtaagagagaccctgtagattattctt 509
Query: 417 caggagactgggggttgggggttagcagacgaatgataaaatactccagttacctttatt 476
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 508 caggagactggggggtgggggttagcagatgaatgataaaatactccagttacctttatt 449
Query: 477 ttcaaactttaaccagcccatccacttgttccaaaatgattgttagtctatcatatttgc 536
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 448 ttcaaactttaacaagcccatccacttgatccaaaatgattgttagtctatcata-ttac 390
Query: 537 ctgtaatttc 546
||||||||||
Sbjct: 389 ctgtaatttc 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|