Query= MSMg01no446_h03.b1 MSMg01no446_h03.b1 CHROMAT_FILE:
MSMg01no446_h03.b1 PHD_FILE: MSMg01no446_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:58 2005
(541 letters)
>mm_chr11_40270409_40271349
Length = 941
Score = 948 bits (490), Expect = 0.0
Identities = 525/542 (96%), Gaps = 10/542 (1%)
Strand = Plus / Minus
Query: 5 gaattctccttttttctctttagacacatttattatctccaaatatctagcaccaggtta 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattctccttttcactctttagacacatttattatctccaaatatctagcaccaggtta 663
Query: 65 taaaccctcacttttgtaaagacaggattttttaaaaattatattttatcatgttggttt 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 662 taaaccctcacttttgtaaagacaggatttttaaaaaattatattttatcatgttggttt 603
Query: 125 aaaatttctaggccatatatagaaatcgagacagaattacacagtgcaaagaaagacaag 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 602 aaaatttctaggccatatatagaaatcgagacagaattacacagggcaaagaaagacaag 543
Query: 185 acactctgggttctgtgctttaactgcatcattgaagctgtaagataattattaaattct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acactctgggttctgtgctttaactgcatcattgaagctgtaagataattattaaattct 483
Query: 245 ggagttttagtcgcgctgtaaacgggccac-----tttttctccttagcacaccccttcc 299
|||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct: 482 ggagttttagtcacgctgtaaacaggccacacaca-----ctccttagcacaccccttcc 428
Query: 300 agaaaatcagacgcttacctttagttaatttgtgatgtgtatcgcgttcagcatcactag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaaaatcagacgcttacctttagttaatttgtgatgtgtatcgcgttcagcatcactag 368
Query: 360 agtaacaacgatgggggtaaatacttatattataaaattgtgaagaattctaaatagaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtaacaacgatgggggtaaatacttatattataaaattgtgaagaattctaaatagaaa 308
Query: 420 agctggtttatttccctttgcattttctacagacagagaaataagcccacagaagttgga 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 agctggtttatttccctttgcattttctacagacagggaaataagcccacagaagttgga 248
Query: 480 tgctgattcaaggtcacacaattagttaatgatgcaggtgggtcctctgactccccaaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgctgattcaaggtcacacaattagttaatgatgcaggtgggtcctctgactccccaaac 188
Query: 540 ag 541
||
Sbjct: 187 ag 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_h03.g1 MSMg01no446_h03.g1 CHROMAT_FILE:
MSMg01no446_h03.g1 PHD_FILE: MSMg01no446_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:58 2005
(237 letters)
>mm_chr11_40076862_40077498
Length = 637
Score = 427 bits (221), Expect = e-124
Identities = 230/233 (98%)
Strand = Plus / Plus
Query: 1 tttttcatggatccactggcttaaactgatgcggacatattacccaagaaagggtgagct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tttttcatggatccactggcttaaactgatgcagacatattacccaagaaagggtgagct 260
Query: 61 ggaggatttggcccatgatgggcattatctattagaggatcatcatgcagctgtgcgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggatttggcccatgatgggcattatctattagaggatcatcatgcagctgtgcgcca 320
Query: 121 tgggatggaaaacagttttctcagagaggcatctttctgcagcacatgggaacaaatacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggatggaaaacagttttctcagagaggcatctttctgcagcacatgggaacaaatacg 380
Query: 181 gatacccacaaccagacattacagagagggagagggagagggagagggagagg 233
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 381 gatacccacaaccagacattacagagagggagagggagagggggagggggagg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
