BAC Information

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BAC

Clone NameMSMg01-446J03
Chromosome11 (Build37)
Map Location 44,507,571 - 44,508,085
singlet/doubletsinglet
Overlap geneEbf1
Upstream gene4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446J03.T7 (MSMg01no446_j03.b1)MSMg01-446J03.TJ (MSMg01no446_j03.g1)
ACCAG535233AG535234
length1,329744
length of high quality
(start - end)
---516 (68 - 583)
definitionCHROMAT_FILE: MSMg01no446_j03.b1 PHD_FILE: MSMg01no446_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:08 2005CHROMAT_FILE: MSMg01no446_j03.g1 PHD_FILE: MSMg01no446_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATTATTTCTCCTCACCTTCTCTCTNCTCTTCTTCTCCTTATGCATTA
TCTCTTCACCTGTCTTCTTCTCTCTCTCTTCTATCCCACTAACCCTATAT
CCGTGCTCTCCTCCCACTATTACCACATCTCCCCTCTTTTCTCTCTCCTA
CGCATCAATTCACACACACATTCTTCCCACTCCGTACCCACATTATTTAC
CACACACAATTTTACATCAAATACCATGATATAAAACTATAATTAACTAC
CATATCATTTATNGATCACACTCTAACTGTAACTATCACACATACTATAG
TCCTTTATTACCTTACTAATCCTCATATATTATCCAATACAATGATATAA
ATACAACCTATATGTAATTCAAACCTACGTATTACTCATTCTACTACTTA
TCTCGCATACTATCATACGCATCNCGTACGCATCGATCTACATAATTAAT
CTTCTACGCAGCCTATATTAAGCCTCTTATCTATATCTCCACCTACATAT
AATGCCACAACCACTTATATCCTCTCAAATAATAAACTCTTTACTAAATG
CTCTCCACTCTATCTACTACAATGCTAACTTTATATAATATTATGCTATT
CTTCTAGTCTAACAATAACACCAACTCTCTCTCTATAATACTCACTCTTT
AATATATCTCTCATACCATTATCCCTCCTAATTTATCACCCCTTTCCTCC
TATTATGTCCTCTCTTTCCTCTTACCTCTAATACTATAACACTAACAACA
CCTCACCTCTTTATAACAAATATGCATATATCTTCCAAATCACTCTCTTC
TTACTACTACCTCATACAAATACCACTTCACATTCTATTATCACAATGAT
CTATTCCACAATACTTCACTCACTTCTACCCTTACTCTATTAACTCGTCA
CCCATCATCATATCACACTCATCAAATACTGTCCCTCATCCTACTCCTCA
ACATTTCTGCACACCAAATCCTCATACTAAAGCACCTATTACCATTATAC
ACATTTACCATCACATACACTCACTAATCAAACTCATTACACCACCCACT
TAGCGACTACTCACCAATACTCACACTAACTACCCACCTTTTCACCANCT
CCCATATATATTCACTACACACTCTCTATATTCCACCACATTTATCTATA
TATATATANCACACGGATATATTCTACCGTTCCTCCATCAACACATAACT
CTAAAACACTACATAATACTCCTCTATCTCACATACACTCACTACGACTT
CACTTATTGTTACTCGTTAACTATACATATATCACATGATCATATACTCA
CATCACATCACACCTNCATATCAACTCAN
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAACTGGCCTTTTAGCATGTATAAGGATTCT
GGGGTCAGAGCACTGTACTAAGGGTGGCTTGTTTAAGGTCTGCAGAGCTG
GCCTTTGATCCTGCTGCCTTCCAGCCAGTCTTCATCCACGGGTCGCCTTT
CCTAAGTTGAGTAATGACAGAAATAAGATGAAGAAAGAATGTTGATCCCA
AAGAGACAAAACCATGAACTATTAAAAGACACAAAAGTAGGAAGGGGCAG
CTTGGGAAGGGGGTCAGCCGGAGTGAGGAAAGGGCAGGAGGGGAAGGGCA
AGAGAGGGTTGGGTAAGAGAAGAAGTTCAAAATGCACCATGGATGCGTAT
AAAAAGGCCCCAGTGAAACCCACTGTGTATATATAAGTACATCACCCCCT
CCCCTCCTTTCCCTCCCTCTAACCCCTTCCATATGCCTCTTTGCTATGGC
TCATTTTTTTAAAAATTATTTTTGTGTGTGTTTGCATAAATATATAACTG
TATCCTGCTCAGTCTGTTTAGTGTCACTTGTGTGTGTGCTTTCACGACTG
AGCACTTGATACTGGATAACCAGTGAGGTAGCTCCATCCCTATGGCAGAC
AGCTTCTGGTCCCAGGATCTTTCTTTCCCCTGTAACTTTTTGGTCTTTCC
CGTGCTGGCCTCATGAAATCTCCTCCCCTCTCTGCAAATACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_j03.g1 MSMg01no446_j03.g1 CHROMAT_FILE:
MSMg01no446_j03.g1 PHD_FILE: MSMg01no446_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:08 2005
         (516 letters)



>mm_chr11_44507371_44508285
          Length = 915

 Score =  975 bits (504), Expect = 0.0
 Identities = 513/516 (99%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaactggccttttagcatgtataaggattctggggtcagagcactgtactaagggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaactggccttttagcatgtataaggattctggggtcagagcactgtactaagggtgg 260

                                                                       
Query: 61  cttgtttaaggtctgcagagctggcctttgatcctgctgccttccagccagtcttcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtttaaggtctgcagagctggcctttgatcctgctgccttccagccagtcttcatcc 320

                                                                       
Query: 121 acgggtcgcctttcctaagttgagtaatgacagaaataagatgaagaaagaatgttgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgggtcgcctttcctaagttgagtaatgacagaaataagatgaagaaagaatgttgatc 380

                                                                       
Query: 181 ccaaagagacaaaaccatgaactattaaaagacacaaaagtaggaaggggcagcttggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaagagacaaaaccatgaactattaaaagacacaaaagtaggaaggggcagcttggga 440

                                                                       
Query: 241 agggggtcagccggagtgaggaaagggcaggaggggaagggcaagagagggttgggtaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 441 agggggtcagccggagtgaggaaagggcaggaggggaagggcaagagagggttgggga-g 499

                                                                       
Query: 301 agaagaagttcaaaatgcaccatggatgcgtataaaaaggccccagtgaaacccactgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaagaagttcaaaatgcaccatggatgcgtataaaaaggccccagtgaaacccactgtg 559

                                                                       
Query: 361 tatatataagtacatcaccccctcccctcctttccctccctctaaccccttccatatgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatatataagtacatcaccccctcccctcctttccctccctctaaccccttccatatgcc 619

                                                                       
Query: 421 tctttgctatggctcatttttttaaaaattatttttgtgtgtgtttgcataaatatataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctttgctatggctcatttttttaaaaattatttttgtgtgtgtttgcataaatatataa 679

                                               
Query: 481 ctgtatcctgctcagtctgtttagtgtcacttgtgt 516
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 680 ctgtagcctgctcagtctgtttagtgtcacttgtgt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space:   457930
Effective search space used:   457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)