BAC Information

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BAC

Clone NameMSMg01-446K18
Chromosome11 (Build37)
Map Location 78,271,065 - 78,271,569
singlet/doubletsinglet
Overlap genenone
Upstream geneCoro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2
Downstream geneSlc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K18.T7 (MSMg01no446_k18.b1)MSMg01-446K18.TJ (MSMg01no446_k18.g1)
ACCAG535311AG535312
length759746
length of high quality
(start - end)
510 (58 - 567)239 (61 - 299)
definitionCHROMAT_FILE: MSMg01no446_k18.b1 PHD_FILE: MSMg01no446_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:16 2005CHROMAT_FILE: MSMg01no446_k18.g1 PHD_FILE: MSMg01no446_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATATGCAGAGAATCCGCGGAATTCCTTCCTTGTC
TCACAGGAAGGGTGGAACACCAAGCAAAGCCAGTGTGTGCAGAGATAAGA
GCCAGCTGTTCTTAATGAACTTGGAACTGGCTATAAATTGTCAAGGGTGT
ATCATCTGCAGCAAGCCCGAAGAAGAATTTTCAAAACATCACCTAAGAGG
CCAACAGAGGCTGCATATAAAATAATAAAATACAATTTCATAGAAAAGAC
AAGTGAAGAAACACAGGTAAATCGAGGATTTTTTTCCCAAGCCTCATCAA
GCCTGACAATATTTTTGATAAGCAATAGTTTTTCCTGGAGCTAAATATTG
GTCATGGCTCAAGAACACAGATTTAGGTCATCCCAAATTCCATGTTCCAA
CTTGGAAGCTGTTTCACACCTTTATAGTAACAGAACAAACGCAGTCACAA
GTCAAGACACTTTTAAACGCATTGATGGAAATATCAGAGAGGTGGGGTGG
AGCAAAGATGGGAGGAGTCTTCTGTTACAGATCTCAGGTTGTCTGACGAC
AATCCTAGACTTGGCGTTGGTGGAAGCCAGTGCTCTGCTGAGCTAATATG
TTTTAAAATATCATATTTAATTAATAGAATTAATTTAATACTTTGATAAT
ACTTTTTAAAGCCTTGATTTGATAGTCCCCCCGTGTAAGACCATACACCC
AGGTGGTCAAAGTAATGGCTAATTATGTGTAGTGCCCCCCCGTTCTCTCA
TCACTTTAT
GCCTGGCGGCGCCTGGCTTCAAAAACAGGNGAACTATAGAAGGATTGCGA
CATCTCACTAATGTGTGAACTGCTATGTGGGTGCTGGAAAGTGTACCCTG
GTCCTCTGGAAGAGCAGGCAGTGCTCTTAACTGCTAAGCGGTCATCTCTC
CAACCACAGAGTAGAATTTTGTACAAGTAAGGTTTTTAATTGTTGGTCTG
GGATGGTAGACGGCTCAGTGGTTAATAGCACTGTTTTTCTTCTAGATGAT
CCAGGTTTGAATCTGTAACCCCAGTCCCAGGGGGGTCAATCCAACCCCAT
TGGCTGNATTCCTCACCAAGCATTCATGTGGNGCATGGGCCTATATGTAC
GCAAAACATTTAAGGAAATTTTAGAGGTCTTAGCTCTTCCTTTGGAATGG
ACTATCTCAAGTACCTTGTGTTCTTTTTCCTTGAATTTATGGTTAATTCA
ACTCAGTAGCACTGCCCTCCGTGGACCTTCCTGCTTTTTCATTACCAACT
TTCTCACTAAGTAGAGTTTTGGCATAAATTGCTCCTTCAGCCTGAAATCT
CAAGAACTTCCTCCCTGCAACAATTGTCACATCTTCTTTAGGGCCTTTGC
CAGCCCTTCCTGGTCGCATGAAGGTTACCCAGCCTTTGTTTTTTTTTTAA
GGACACTTCNAAAAGGAAGCTGTTTAAAAGCTCTGACTCAATTGGAAATT
TCTCCTTCCCTCCTTTAAAGATCGCCCTATAAGCTGTAATAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k18.b1 MSMg01no446_k18.b1 CHROMAT_FILE:
MSMg01no446_k18.b1 PHD_FILE: MSMg01no446_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:16 2005
         (510 letters)



>mm_chr11_78270863_78271772
          Length = 910

 Score =  884 bits (457), Expect = 0.0
 Identities = 493/505 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggtggaacaccaagcaaagccagtgtgtgcagagataagagccagctgttcttaatgaa 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 gggtggaacaccaagcaaagccagtgtgtgcagagatgagagccagctgttcttaatgaa 262

                                                                       
Query: 63  cttggaactggctataaattgtcaagggtgtatcatctgcagcaagcccgaagaagaatt 122
           | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 263 cctggaactggctataaattgtcaagggtctatcatctgcagcaagcccgaagaagaaat 322

                                                                       
Query: 123 ttcaaaacatcacctaagaggccaacagaggctgcatataaaataataaaatacaatttc 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 ttcaaaacatcacctaagaggccaacagaggctgcatataaaataataaaatgcaatttc 382

                                                                       
Query: 183 atagaaaagacaagtgaagaaacacaggtaaatcgaggatttttttcccaagcctcatca 242
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 aaagaaaagacaagtgaagaaacacaggtaaatcgaggattttttttccaagcctcatca 442

                                                                       
Query: 243 agcctgacaatatttttgataagcaatagtttttcctggagctaaatattggtcatggct 302
           |||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 agcctgacaatatcagtgataagcaatagtttatcctggagctaaatattggtcatggct 502

                                                                       
Query: 303 caagaacacagatttaggtcatcccaaattccatgttccaacttggaagctgtttcacac 362
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 caagaacacagatttaggtcatcccaaattccacgttccaacttggaagctgtttcacac 562

                                                                       
Query: 363 ctttatagtaacagaacaaacgcagtcacaagtcaagacacttttaaacgcattgatgga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttatagtaacagaacaaacgcagtcacaagtcaagacacttttaaacgcattgatgga 622

                                                                       
Query: 423 aatatcagagaggtggggtggagcaaagatgggaggagtcttctgttacagatctcaggt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatatcagagaggtggggtggagcaaagatgggaggagtcttctgttacagatctcaggt 682

                                    
Query: 483 tgtctgacgacaatcctagacttgg 507
           |||||||||||||||||||||||||
Sbjct: 683 tgtctgacgacaatcctagacttgg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)