BAC Information

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BAC

Clone NameMSMg01-446M07
Chromosome11 (Build37)
Map Location 50,247,193 - 50,247,435
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446M07.T7 (MSMg01no446_m07.b1)MSMg01-446M07.TJ (MSMg01no446_m07.g1)
ACCAG535385AG535386
length762806
length of high quality
(start - end)
243 (67 - 309)49 (62 - 110)
definitionCHROMAT_FILE: MSMg01no446_m07.b1 PHD_FILE: MSMg01no446_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:23 2005CHROMAT_FILE: MSMg01no446_m07.g1 PHD_FILE: MSMg01no446_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTAAACGACTCCTAAAGCANGAGCGAGGGCGGAATTCCCA
CAATTACTGAAATGGTGTGGCCAGNCAGTTCTTGGGCCTGTTTTCCCTCC
TATGATTTTGAAATATCCATGTTTCCCAACCCTTTCAATTCACCCTCAGA
GTGACAAGCTTTTAGTTTGGTTCTAGTCCCAGAAACCACCCATTTAATAA
GTCTGTGTTGCATGGTCTGTGACTGACAGATGGTGAAGTTGTGGTTCCAT
CCAGGGGCTCCAGTCATCCTTGAGTGGCAACTCAGAGGCAACTCCACTGT
AGCCTGAACTTTTTTCTTTCTTCCTGTGACTACTCTCCTGCATCAACAGC
AGTCCTACTTGCGACTGTTTCAATATCCTGAAGTCAACACTACTAACGCC
ATTCCTGCATATTCTATTTTAACATTTCTTGACCACATCAGACCTCATTC
CCTCCCTCTGTCCTCCCGGATTCCCACTGCTGATAAGACACCTCACCTGT
AAGAGAAATTCTCTCATCTTTTCTGATCTTCTTCTTCTCCACTTTACTTC
TCATTTATTGTACCCTTCTCCCCTCTTACCCCTCTCTTAATCTTCCCTCT
TCCCTCTATATACTCTTCTCCCCTTTTTTTGATTCCCCTTATTTTCCCCG
CTACCTTTTCTCTTTCCTTTTCCCCACCTATTTTGCTAATTCCCACCTCC
TTATTCCCCCGTCTCTCGTCATCTAGTCATTTACTGTCATGCCCTTCATT
ACCTTTACTTTT
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCAGCGATTCTTGTTATTGTTTTAAGGTGTTGGTTGGGGAGGGTG
ATTTGTTATACAGCAACGGACCGCTGACACAAACTTGCTCTGTATAAGCC
TAATTCCACTCCTTGATTGGCTGAACAAGATACTACAGCTCATTTACTGC
CTGCTAGAATTAAATTCTTTAAAGGAAGAAAACATCGATTCCCCGTTTTA
AAATTGTATAATCTACTATGTCTACTATACTCTCTAATACCACCAAGTTA
CATTACCTGAACCCTTTTTTGTTGCCGCGCCTCTCCTACCCCCATACATT
GCTGTTCTACTCCCCGCTGCATCTCCTTCCCCTATCCCCCACCATCTCCT
ATCTTCCTCACTTCCCCCCCCCCCCCCTCCCTATTTCCACCCCCCCCCAC
CTTTTTTCCCACCTTTCTATCCCTCTTCACCTACCCTTTCACCCCCTTCT
TCCCCCTTTTTCCTCCCTCTCTCCCCCCTCCCCTCTCTCTTCCCTCTTTT
TCTACCATTACCCCTCCCTTACCCCCGTCCCCTCTCTTCTCCTCCCCTAT
TTTCCCACCCTTTTCCCATCCATTACCCTTTTCTTACCCCCTTCCTCCCC
TCTTTCCCTTTCTCCTCCCGCATTTTTTTCCCCTTTTATTCCCTCTTTAT
GCCATCTCTTCTTCTCCTTTTCCCCTCTCTCCCTTTCCCCCTTTCTATTT
TACTATCTTGCTTTTTCCTATACTTATTACCCTATCTTCTTTTTATCCCC
CCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_m07.b1 MSMg01no446_m07.b1 CHROMAT_FILE:
MSMg01no446_m07.b1 PHD_FILE: MSMg01no446_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:23 2005
         (243 letters)



>mm_chr11_50246993_50247635
          Length = 643

 Score =  449 bits (232), Expect = e-131
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggccagncagttcttgggcctgttttccctcctatgattttgaaatatccatgtttcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggccagtcagttcttgggcctgttttccctcctatgattttgaaatatccatgtttcc 260

                                                                       
Query: 61  caaccctttcaattcaccctcagagtgacaagcttttagtttggttctagtcccagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccctttcaattcaccctcagagtgacaagcttttagtttggttctagtcccagaaac 320

                                                                       
Query: 121 cacccatttaataagtctgtgttgcatggtctgtgactgacagatggtgaagttgtggtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cacccatttaataagtctgtgttgcatggtctgtgactgacagatggtgaagttgtgggt 380

                                                                       
Query: 181 ccatccaggggctccagtcatccttgagtggcaactcagaggcaactccactgtagcctg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatccaggggctccagtcatccatgagtggcaactcagaggcaactccactgtagcctg 440

              
Query: 241 aac 243
           |||
Sbjct: 441 aac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)