BAC Information

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BAC

Clone NameMSMg01-447A16
Chromosome11 (Build37)
Map Location 40,246,796 - 40,247,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447A16.T7 (MSMg01no447_a16.b1)MSMg01-447A16.TJ (MSMg01no447_a16.g1)
ACCAG535593AG535594
length1,288786
length of high quality
(start - end)		---474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no447_a16.b1 PHD_FILE: MSMg01no447_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:45 2005CHROMAT_FILE: MSMg01no447_a16.g1 PHD_FILE: MSMg01no447_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTAAANNNTTTTTCCCCNNCCCCTCACNATTAACCTCATATCACT
CTCATCTACTTCAAATACTACGCAGTGCGAGCGCAGGCNATACGCGTACT
GTCTACATACTACTGCGACTGCCGAGCAGACTCTGCTACTCACATCGACA
CAGCATACACAACCGAGTCCTCAAGACGCAAGCAACCACACCATCATAGC
AAGTACGTACATCAAGATACGACGCTGTTAGTGTGAGACTGCTAGCTGCT
GGTAGTGCTCGGAGGAGGACTGTNCTGATATGTTCCTACCAGTACGATGT
GTNCGTAAGTCTGTCGTACGTCTACTGTCGTACGACTCTATCGGCGTTCT
CTCAGCTNCGTATTGTCTGTGCTCCTATCTTATCACGCTCAGACGTTTGT
GTGATCCACGATCACGTGCTGTACTCTCACGCGACTCGCCGTCCGGCTAC
GCGTAGCGTCGCGTAGCCTAGNGCGCTCGCTGACTCTCTTCCACGTCATT
GTCTCTTGTACACTCGCGTATATCGACTTTATATACTCACAGAACCCACT
ATCTCCGCCTTTTACTGTACATGCGAGTCGCATTATAGCTGCTTTATGTG
CCATATATGTAGACACGACACACTCTATAGACCTACCACACCAATATTAT
CAACGAAGTATATGCTCTGTATTCGTTTCGAGTAAGATGGGGAGACGTCT
ACCGCGAATANACTGTAGTGTCATAACAGATCACAGAGTTCCGATCGGTC
AGATCGCATTAAGGAAGGCACTACCGATCGAGACGCCTACTACATATCTT
ACTACGACGTCATGCACACCGATGATGTCAGCACGTGAGTATGAACGCTC
TTACTTGTACTGATGATAATCGCCATGAGCACCTATTTGAGAAGCGACAC
CTATACGCTGACATGAGATGTCATCCAACATTAGCACACGATCTGATAGC
ATACGGTACGTGCGCGACTCGGCGATTATGTATTATTCCACGTCCACATT
AGTCTGACTCCATGCTACCGGTTTGACTCGCAGCGGAGCGTGCTATTAGC
ACGTGCGGGTAAGTATGCGCACTGTTGTATTATCATATCGAGTAGCATAA
GCGTGCTGCTGGTCTCATATACCGCACCCCTGCTCATGTCACAGACGCTG
CACCCGCCGCCTCTCCACATAATTGTGTATTACGTGTCGTAAATAGCACA
TCGCGGTTGAAAATAATTTACGTGTGCACATTTCTGTAGTCTCCTGTAAC
CCTTTGTGTATTGACGCTACTCATTGCTACANTACGTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGGGGTAATGAGATAGAAAG
AAAAGGATTAGGCACAAAAACTTAGAGTGAAAGGTATAACTCTACAATCT
CTGCTCAATTCCTGTGGATCCGAAACTGTTGTAAAAATGTAAAAGCATAT
TTTAAAGACCCCACCAGGGACATTCATTTTTTGCCAAGCCTAACCTCCAT
ACAATTGAAAGCAGAATCTAAAATTAAAATAAATAAATAAATAAATAAAT
AAATAAAACTTTACCTTGCTCTCTCCCATGGGCTCGTCATCTCAGACAAC
ACTTTCCCTTGCTAACCATTTGGACCTCTCTCCATTTTCACTGGCTATTG
AATTGCCAGGTTAAATATTTTGTCTCTCCCCTTTTGATCTTGGTTGCACT
GGTGCATTTGTAATTACAGTTTAATATTTGATGTGCCATGATATGGTACT
ACAGGGACCAGTGTGTTTCATTACCTGAACTCTCAGTTTCTCCTTCAGTA
TTCTTACCTAGTATGCACTGATAACGCACTCCTGAGTGACACAATACCTA
TGTCTCTTTTGAGATTTTTTTCACTGTCTTGACGNGACTAAACACATGGC
AAGAAAAGGAATTTCCCTAATTTTTACTCTCCACGCCCAAAAAAAAATCC
TTGAAGCAATTTGATTTTTCCCTTGGTAGCCCCCCCTCTCTTAAATGGAT
AAAAAAAAAAGGCTGTATATATAATTCTCCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_a16.g1 MSMg01no447_a16.g1 CHROMAT_FILE:
MSMg01no447_a16.g1 PHD_FILE: MSMg01no447_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:45 2005
         (474 letters)



>mm_chr11_40246588_40247461
          Length = 874

 Score =  704 bits (364), Expect = 0.0
 Identities = 438/474 (92%), Gaps = 22/474 (4%)
 Strand = Plus / Plus

                                                                       
Query: 9   gtaatgagatagaaagaaaaggattaggcacaaaaacttagagtgaaaggtataactcta 68
           |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||
Sbjct: 209 gtaatgagatagaaagaaaaggaccaggcacaaaaacttagagtgtaaggtataactcta 268

                                                                       
Query: 69  caatctctgctcaattcctgtggatccgaaactgttgtaaaaatgtaaaagcatatttta 128
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 caatctctgctcaattcctgtggatctgaaactgttgtaaaaatgtaaaagcatatttta 328

                                                                       
Query: 129 aagaccccaccagggacattcattttttgccaagcc-------taacctccatacaattg 181
           ||||||||||||||| ||||||||||||||||||||       ||||||||||||||| |
Sbjct: 329 aagaccccaccaggggcattcattttttgccaagccaaatctataacctccatacaatgg 388

                                                                       
Query: 182 aaagcagaatct-aaaattaaaataaataaataaataaataaataaataaaactttacct 240
           ||||||||| || ||||||        |   |   |||| ||||||||||||||||||| 
Sbjct: 389 aaagcagaaactaaaaatt--------t---t---taaaaaaataaataaaactttaccc 434

                                                                       
Query: 241 tgctctctcccatgggctcgtcatctcagacaacactttcccttgctaaccatttggacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 tgctctctcccatgggctcgtcatctcagacaacactttcccttgcttaccatttggacc 494

                                                                       
Query: 301 tctctccattttcactggctattgaattgccaggttaaatattttgtctctccccttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctctccattttcactggctattgaattgccaggttaaatattttgtctctccccttttg 554

                                                                       
Query: 361 atcttggttgcactggtgcatttgtaattacagtttaatatttgatgtgccatgatatgg 420
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 atcttggttgcactgttgcatttgtaattatagtttaatatttgatgtgccatgatatgg 614

                                                                 
Query: 421 tactacagggaccagtgtgtttcattacctgaactctcagtttctccttcagta 474
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 615 tactacagggaccagtgtgtctcattacctgaactctcagtatctccttcagta 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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