BAC Information

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BAC

Clone NameMSMg01-447B12
Chromosome11 (Build37)
Map Location 100,604,120 - 100,786,144
singlet/doubletdoublet
Overlap geneLOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3
Upstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c
Downstream genePtrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447B12.T7 (MSMg01no447_b12.b1)MSMg01-447B12.TJ (MSMg01no447_b12.g1)
ACCAG535633AG535634
length782777
length of high quality
(start - end)
456 (72 - 527)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no447_b12.b1 PHD_FILE: MSMg01no447_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:49 2005CHROMAT_FILE: MSMg01no447_b12.g1 PHD_FILE: MSMg01no447_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,604,120 - 100,604,572)(100,785,902 - 100,786,144)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTGATCCTTTCTCGCCTCTATCCCTGGAGTTTTGGGGTTACAGGC
ATGAGCCACTACACTTGGCTCTCTCTCTCTTGTATGAAATATAGAATAAA
AATGCTCAGTCATAGCGTTGCTCTTAGCCTGTCACCCAAGTATCTTCATG
AGTGATTTTTAGTGAGTACGGAATCCATTGAGAAACTTGTTAAAATGCAG
AGTTCTTGGCCCCACCTGAGACATTCCAAACTGACAGAAGCCAGGGAACT
TGTAATTTAAAGGGTAGTACTGATACTAACCCGGGTATGGGAATCACTGG
CCTGGAGTTGAGGGAAGCCTGAGGCCATAAGCAGAAGGAGAACTTGCCAG
TAACCTTGAATGGGAGAGAGCTCTAGGCCCTGCTCTGGCCCAGATGCTGC
CTCTCTGGGCTGCAGGCTGTTTATCAGAACAGAGGGAAGGTGACTCCCAG
GGGTTGAGTGTGGTAGCTGTGTGGTGACAGACAGTACTGGGATCCCTTGC
GGAAGAAGTAGAGGCGGTGCCTAGCCTAGTCTAAGCATATAAAATATGGT
CTCTTCCTTGCCCGTATTCAGTCATAAGGTTTTATGCTTCTCTATGTCTA
AAAGTACATGCTCTTGTTCACCCTTCTATCTTCTCCTACTTTTTCCCTCT
TCCTCCCCCCCTTTTTATATTCATTCCCCTTTCTCTCTATCTTTTCACCA
CCTGTGTTTATTGTTTATCTTAACCTTTCCCC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCATGCAGACACTAATGCT
GTGAGCTTGAAGTCAGAGACAAGGAAGCGAAGTACTTGTATCTCACCAGC
CCAAATGGATAATTATGATCTTAACCTTTAGCTCCACTGCCTTTAGATAA
GGCTGGGCATGGGGCTGCAGCCCCAACTACATACCAAGGTGCTGACACTT
CTGTTCTGACTGCTGTCTCTGCTCTTAGACCTGTCCCCTGGATTATTTCT
GACTCCTCCTTTGGAGCTGATTCATGCTGACTTGGATCTTGCCCAGCTTC
TACTCTCTGTCGCTGCTGTTTTGTCCTGGTTTGGTTCCTTAACACAGGGT
TCTCTATGTAGCCCTGGCTGGCCTGGAACTCAATATGTAGACCAGGCTGG
CCTCAAATTTGCAGCAATCCTCCTGCCTCTGTGGAAGTGGTTTTTTTCTT
GAAACAGGATCCTACAAGCTACGTACCATAAATGTTCTTAAGTTACTGCC
TAGGCATGTCCCCTTGGCCAAGCATTGACCTTTACGCTCACCCCCATCCT
GAATTACATTTGTTTGTAAATAATCCCCTTTTTTTAAAATATTATCTCTC
TGGTTTTCTTTTTATTTTCATTTCTTTTACACTCTTACTCTGCCGTTATA
TTTCTCTTCTTACACTTTTCTTCCGCCTATCTTACACATCCTTATTTTAT
CTCCTTTCTCTCTCCCCACTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_b12.b1 MSMg01no447_b12.b1 CHROMAT_FILE:
MSMg01no447_b12.b1 PHD_FILE: MSMg01no447_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:49 2005
         (456 letters)



>mm_chr11_100603920_100604775
          Length = 856

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatccctggagttttggggttacaggcatgagccactacacttggctctctctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatccctggagttttggggttacaggcatgagccactacacttggctctctctctctt 260

                                                                       
Query: 61  gtatgaaatatagaataaaaatgctcagtcatagcgttgctcttagcctgtcacccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgaaatatagaataaaaatgctcagtcatagcgttgctcttagcctgtcacccaagt 320

                                                                       
Query: 121 atcttcatgagtgatttttagtgagtacggaatccattgagaaacttgttaaaatgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttcatgagtgatttttagtgagtacggaatccattgagaaacttgttaaaatgcaga 380

                                                                       
Query: 181 gttcttggccccacctgagacattccaaactgacagaagccagggaacttgtaatttaaa 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcttggccccacctgagacaatccaaactgacagaagccagggaacttgtaatttaaa 440

                                                                       
Query: 241 gggtagtactgatactaacccgggtatgggaatcactggcctggagttgagggaagcctg 300
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtagtactgatacaaacctgggtatgggaatcactggcctggagttgagggaagcctg 500

                                                                       
Query: 301 aggccataagcagaaggagaacttgccagtaaccttgaatgggagagagctctaggccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccataagcagaaggagaacttgccagtaaccttgaatgggagagagctctaggccct 560

                                                                       
Query: 361 gctctggcccagatgctgcctctctgggctgcaggctgtttatcagaacagagggaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctggcccagatgctgcctctctgggctgcaggctgtttatcagaacagagggaaggt 620

                                            
Query: 421 gactcccaggggttgagtgtggtagctgtgtgg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 gactcccaggggttgagtgtggtagctgtgtgg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no447_b12.g1 MSMg01no447_b12.g1 CHROMAT_FILE:
MSMg01no447_b12.g1 PHD_FILE: MSMg01no447_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:49 2005
         (245 letters)



>mm_chr11_100785702_100786346
          Length = 645

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctcatgcagacactaatgctgtgagcttgaagtcagagacaaggaagcgaagtactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 443 agtctcatgcagacactaatgctgtgagcttgaagtcagagacaaggaagtgaagtactt 384

                                                                       
Query: 61  gtatctcaccagcccaaatggataattatgatcttaacctttagctccactgcctttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtatctcaccagcccaaatggataattatgatcttaacctttagctccactgcctttaga 324

                                                                       
Query: 121 taaggctgggcatggggctgcagccccaactacataccaaggtgctgacacttctgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaggctgggcatggggctgcagccccaactacataccaaggtgctgacacttctgttct 264

                                                                       
Query: 181 gactgctgtctctgctcttagacctgtcccctggattatttctgactcctcctttggagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 gactgctgtctctgctcttagacctgtcccctggattatttctgactcctcctttggaac 204

              
Query: 241 tga 243
           |||
Sbjct: 203 tga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)