BAC Information

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BAC

Clone NameMSMg01-447B19
Chromosome11 (Build37)
Map Location 59,144,940 - 59,145,315
singlet/doubletsinglet
Overlap geneWnt9a
Upstream geneSh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a
Downstream geneGm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447B19.T7 (MSMg01no447_b19.b1)MSMg01-447B19.TJ (MSMg01no447_b19.g1)
ACCAG535647AG535648
length777772
length of high quality
(start - end)		430 (76 - 505)375 (82 - 456)
definitionCHROMAT_FILE: MSMg01no447_b19.b1 PHD_FILE: MSMg01no447_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:51 2005CHROMAT_FILE: MSMg01no447_b19.g1 PHD_FILE: MSMg01no447_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTTATTTACCTGAGGTGCTCTATCCGATGCTGTTTTT
ATGGTAGCTGAATAAAGAAAGCCATAAATCAAGGCACTTCCCAATACACT
GCGGAAACAGTAAGTGAGCAGCCACAGCGAATCAGAGAAATGGTGGCTAC
AGACTTCAGCTGCTATCTGGGGACACTCTGGGCTTTGGGGTTGGTGAAAA
CTTAGTTTTGTTAATGCACCCCGAAAGGTTTTATCTGTTATTCATATGAC
CTTAGGCCGACTTTCACCTTAGGTCAGACACGGAGGTGGGCAAGGAGTAG
CCATTTTAAGGGCTAAAGGTAGCCCAAGATAAAGCAAAATTAGGCTCTGG
TCCTGCAACATTTCGACAAATCAGTGATGCTCTAATCAGTTAATCAGCAT
GGTGACAGGGTCTCTCTGTGTAGCCCTGGCTATCCTGGAACTAGTTCTGT
AGGCCAGACTGGCCTGAAATCCAGAGATCCGCCTGTCTCCTGATTGCCGG
GACTGCCCACCTTTAAAAAACTTTTACCTGCAGAACGGTTTGCACGGTCT
TTCCAAGCAAAGTAACCTTTGAGCAATTTATACAGGTTTTCGGAAACAAA
TAATGGCCGTCTGGTGTCCTTAATTGGGCAATGGGGATATTTTCTAACTC
CAAGCCTTATTCCCCGGTCTTTTCTCTTTATCCCCAAAAGATCTTTCTCT
GTTAAAGGTACCCATCGTCCTTTTCTA

AAAACCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACACCTGCAGGAGCTGAC
TCCACGGCCCTGCCGGCCTTTCTGCAGGGAGTGTAGGCTTTGCACATAGT
GCAAAGGGTCTTAATCTGCATGGAGTGAGCCCTGCAGGTCCAGCCTATCC
TGCTGTGTGGGGCACAGGGTTACAAACAACACAGAAGGTCTACAAGGATG
AAGAGGTGCCCCTAGCACACTTGGGTCCTGGTATACAGACAGCCAGTTGG
CTGTCTCTCGGCCCAGAGGGCGGGGCTGTTCCCTGTCTGGCCTCCTCAAC
CCTTTTGCTTATGCCTTGGGCCTGAGCTTGGCCCCCTGACCCGAGAGCGT
TGCAGTAATGCTTTCTCAGTTGCCTCTGTCCCTGACACATCAGTATAGCC
CTTGTCAGGGACCAGCATGTTGACTGGCCCTCTGTGCCTCTTGGCTTCCT
CTGAGGCATGGAAGGCAGGTGCACCTTCATAAACGCATGGGTGCCCTTCT
GGCCCATAGCCTGATGGCATTCTTGTCTTTCTAAACCAAACTCTAGGATA
GGGGCGGCTCTCCCTTCCCTGGTTGTAGCCTCCTCGCCTCTGATACTTAA
ATATTCTTTGTTCGTCTCTTGACTTTTTTTTCCATTATTTTTTTTTCTCT
TACTATAGCATCTCTTATTTTTCTGGTGCCTTTATCCATCCTTCTGTGTC
CTTCCCCTCTATTTTGCTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_b19.g1 MSMg01no447_b19.g1 CHROMAT_FILE:
MSMg01no447_b19.g1 PHD_FILE: MSMg01no447_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:51 2005
         (375 letters)



>mm_chr11_59144740_59145515
          Length = 776

 Score =  688 bits (356), Expect = 0.0
 Identities = 371/376 (98%), Gaps = 1/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacctgcaggagctgactcc-acggccctgccggcctttctgcagggagtgtaggctt 59
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tacacctgcaggagctgactccaacggccctgccagcctttctgcagggagtgtaggctt 260

                                                                       
Query: 60  tgcacatagtgcaaagggtcttaatctgcatggagtgagccctgcaggtccagcctatcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacatagtgcaaagggtcttaatctgcatggagtgagccctgcaggtccagcctatcc 320

                                                                       
Query: 120 tgctgtgtggggcacagggttacaaacaacacagaaggtctacaaggatgaagaggtgcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgtgtggggcacagggttacaaacaacacagaaggtctacaaggatgaagaggtgcc 380

                                                                       
Query: 180 cctagcacacttgggtcctggtatacagacagccagttggctgtctctcggcccagaggg 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagcacacttgggccctggtatacagacagccagttggctgtctctcggcccagaggg 440

                                                                       
Query: 240 cggggctgttccctgtctggcctcctcaacccttttgcttatgccttgggcctgagcttg 299
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggggctggcccctgtctggcctcctcaacccttttgcttatgccttgggcctgagcttg 500

                                                                       
Query: 300 gccccctgacccgagagcgttgcagtaatgctttctcagttgcctctgtccctgacacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccccctgacccgagagcgttgcagtaatgctttctcagttgcctctgtccctgacacat 560

                           
Query: 360 cagtatagcccttgtc 375
           ||||||||||||||||
Sbjct: 561 cagtatagcccttgtc 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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