Query= MSMg01no447_f18.b1 MSMg01no447_f18.b1 CHROMAT_FILE:
MSMg01no447_f18.b1 PHD_FILE: MSMg01no447_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:14 2005
(575 letters)
>mm_chr11_88595382_88596357
Length = 976
Score = 1013 bits (524), Expect = 0.0
Identities = 560/572 (97%), Gaps = 1/572 (0%)
Strand = Plus / Plus
Query: 5 gaattctgatgctctcgcgctgcctggaacattctagaacgtggcaggagctctgcaggt 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatgcgcttgcgctgcctggaacattctagaacgtggcaggagctctgcaggt 264
Query: 65 atttattgaacaaatgagccttaaatggccttaatactcacccaaagggcagctttattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttattgaacaaatgagccttaaatggccttaatactcacccaaagggcagctttattt 324
Query: 125 tcagaaaagccaacattaaaatatcatccgagagaagggatatattctagagatgattgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaaaagccaacattaaaatatcatccgagagaagggatatattctagagatgattgc 384
Query: 185 tgaaattacaaggtgagttgacacaggaagtgtgttcccggtctttagcaactgtctgta 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 tgaaattacaaggtgagttgacacaggaagtgtgttgccggtctttagcaactgtctgta 444
Query: 245 aaatccaggggaaagagaagtttagcccccaaactgaaaatatttcccacctcacttcag 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatccaggggaaagagaagtttaacccccaaactgaaaatatttcccacctcacttcag 504
Query: 305 atcatttcctatcacgttatcctgattttt-cccccttctcctttgcacttcttgagatg 363
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct: 505 atcatttcctatcacgttatcctgattttttcccccttcttctttgcacttctcgagatg 564
Query: 364 tgcaattatggtgttgattcattttctctccctcactggccgcttctcacttccattcac 423
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 565 tgcaattatggtgttgattcatgttccctccctcactggccgcttctcacttccattcac 624
Query: 424 aagcagagaatcgaccttgccggtcctgttccctacacacacctaggacaaagattgttc 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcagagaatcgaccttgccggccctgttccctacacacacctaggacaaagattgttc 684
Query: 484 agaaagcattagctcaaaaagtggattttaagtgcttagaaatagccaagatgagtgcga 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 agaaagcattagctcaaaaagtggattttaagtgcttagaaatagccaagatgagtgcaa 744
Query: 544 ggctcgatgagcggtgcagggatgcgcttgct 575
|||||||||||||||||| |||||||||||||
Sbjct: 745 ggctcgatgagcggtgcaaggatgcgcttgct 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_f18.g1 MSMg01no447_f18.g1 CHROMAT_FILE:
MSMg01no447_f18.g1 PHD_FILE: MSMg01no447_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:14 2005
(387 letters)
>mm_chr11_88762533_88763319
Length = 787
Score = 710 bits (367), Expect = 0.0
Identities = 382/387 (98%)
Strand = Plus / Minus
Query: 1 accccagtagaaccggggcacagcaagctgcagacggttatttttagcaggagagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 accccagtagaaccggggcacagcaagctgcagacggttatttttagcaggagagaaaga 528
Query: 61 gaaagcagagtgtccacccttctgagtgaagaggggacagagccgagcagccttgcgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaaagcagagtgtccacccttctgagtgaagaggggacagagccgagcagccttgcgcaa 468
Query: 121 gaagagctgcctccagtatctggacttagtcttggtccaccatttctcctccccttgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaagagctgcctccagtatctggacttagtcttggtccaccatttctcctccccttgact 408
Query: 181 cctggggcagactggggtcactttcttggaccatgtggaagcttccctagaaaccattct 240
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 407 cctggggcagactggggtcactttcttgaactatgtggaagcttccctagaaaccattct 348
Query: 241 tacccactcactgttcagtccgttacattgaaatggaagagtgtgtacaaaaatgtcacg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 tatccactcactgttcagtccgttacattgaaatggaagagtgtgtacaaatatgtcacg 288
Query: 301 atccataaagttgagacctttactaggggaaaaggcagcagtcccttgatactttctgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 287 atccataaagttgagacctttactaggggaaaaggcagcagtcccttgagactttctgcg 228
Query: 361 ggagccaagaggagcctgcaagtctgc 387
|||||||||||||||||||||||||||
Sbjct: 227 ggagccaagaggagcctgcaagtctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
