BAC Information

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BAC

Clone NameMSMg01-447K07
Chromosome11 (Build37)
Map Location 66,222,594 - 66,401,406
singlet/doubletdoublet
Overlap geneGm879, LOC668323
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447K07.T7 (MSMg01no447_k07.b1)MSMg01-447K07.TJ (MSMg01no447_k07.g1)
ACCAG536047AG536048
length780777
length of high quality
(start - end)
285 (71 - 355)374 (106 - 479)
definitionCHROMAT_FILE: MSMg01no447_k07.b1 PHD_FILE: MSMg01no447_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:36 2005CHROMAT_FILE: MSMg01no447_k07.g1 PHD_FILE: MSMg01no447_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,222,594 - 66,222,878)(66,401,034 - 66,401,406)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGCGGAA
TTCCACACCCCTTACCTCTTACCCCATAAGAAACCCCTAGCTTTCGAGCC
TCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCAGTCCGGAG
CTCCATCATTAAACGTCCTCATGTAATTACATCAAGAGATGATCCTTTGT
GATTTTTTGCGTGCACGCCGAATCGGGAATTGGGTGGGGGTTTCCCCACT
AGGTCTAACAGCACCAATATTAAAATTCTTTATGATCTTTTACTCCCCTG
ATGTAATTATACATTGTGATTTTTTCTTTTGCCTCACTTACTCTTCTTGA
ATGTAGATCTGCATAAGAGTGTTTATTAGTAACCTAGTGACAGAGTTGAT
ACTAGGCTGTCTTGAAATTTCTGACAACAAAATTAGTCCAACACTTTTCA
ATTTATTCTTATGTTCTTATTTTCTTGGATCAAAGGCCTTAATATGACTA
CTTTTCTTGTCATAACATCACAAAAATGCCCTCCTAGCCCATCTGGTCAT
ATTTTTTCCGCCTCCGATACTTTTTAATTTTGTTTCTTTGTTATTCCTCT
TATCTCTTCGTTTCTTATTGCTTCCTATATACTTTCCTTATAATGTTATA
TTTCTACTCCATTTCATCGTCTTTTATTTTTCTTTATCCACGCTATATAT
CTCACATGTATTCCCACAATATTTTATATTTAAAATCGAACGTCTTCTAT
TTTTTCACCCTCTATTTTATTTCTAACCTN
GCCTTATANNNNNNNAGTGACGNNNNNNCCAATGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACATGGAGATTCTGACCCATGGTGCAATCTTCTCTCAGCTCATTG
CACCCTCTAGTTTTCTAGCCTCTGAGAGGAATCCCTGTACTATAAGAATT
GAACACTGTAGTTTTCTATCCAAACAGACCCTCAGAACTTTGATTGAATC
AGTGATGATAATTCATATGTAGAAAGTTATAATGTGACTTAACTCCCCCA
AATGGTGAGTAAATTTATTAACTACTTTCTCTGTGCTAGAGACCTTTCTA
AGGTTTTGTTTTTGTTCTAATTTGCTTGCTATTGTTTTGATAAAGACACC
ATAACCAATAGCCTTTTGAGAAAGGAAGGGTTTATTTAGCTTACATCCTG
ACCACAGTCTACCATTTTGGGACACCAACGCATGAACTCAAACAGGGAAT
ACACCTGGAGGCAGGAACTGATGCTATGGAGGATAAACTGTTTCAGCTGG
CTTACTTCCCATGACTTGCTCAGTTTGCCTTTTCTTATTCAATCTAGTAA
CCTTCTGCCTAGGTAATGGATTGCCCATCGTGGTAACGTATCTTTTCCAT
ATTTATTATTTCTCCTTCCAAACTATATACCCTTATTCTGCTAACTCTAA
CTCTTTACCCTCCTTTGAAAATAATCTAATTACACACTCATTCCTGCTAC
CTTTTCTTTCATCCTACCCCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_k07.b1 MSMg01no447_k07.b1 CHROMAT_FILE:
MSMg01no447_k07.b1 PHD_FILE: MSMg01no447_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:36 2005
         (285 letters)



>mm_chr11_66222394_66223078
          Length = 685

 Score =  489 bits (253), Expect = e-143
 Identities = 277/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccataagaaacccctagctttcgagcctcgtggccgacatccgttatctcctgtgtg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 accccataagaaacccctagctttcgagccttgtggccgacatccgttatctcctgtgtg 260

                                                                       
Query: 61  ggatgcatgtcagtccggagctccatcattaaacgtcctcatgtaattacatcaagagat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgcatgtcggtccggagctccatcattaaacgtcctcatgtaattacatcaagagat 320

                                                                       
Query: 121 gatcctttgtgattttttgcgtgcacgccgaatcgggaattgggtgggggtttccccact 180
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcctttgtgattttttgcgtgcacaccgaatcgggaattgggtgggggtttccccact 380

                                                                       
Query: 181 aggtctaacagcaccaatattaaaattctttatgatcttttactcccctgatgtaattat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtctaacagcaccaacattaaaattctttatgatcttttactcccctgatgtaattat 440

                                                        
Query: 241 acattgtgattttttcttttgcctcacttactcttcttgaatgta 285
           |||||||||  || |||||||||||||||||||||||||||||||
Sbjct: 441 acattgtgaacttctcttttgcctcacttactcttcttgaatgta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no447_k07.g1 MSMg01no447_k07.g1 CHROMAT_FILE:
MSMg01no447_k07.g1 PHD_FILE: MSMg01no447_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:36 2005
         (374 letters)



>mm_chr11_66400952_66401725
          Length = 774

 Score =  659 bits (341), Expect = 0.0
 Identities = 365/373 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggagattctgacccatggtgcaatcttctctcagctcattgcaccctctagttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 455 acatggagattctgacccatggtgcaatcttctctcagctcattgtaccctctagttttc 396

                                                                       
Query: 61  tagcctctgagaggaatccctgtactataagaattgaacactgtagttttctatccaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tagcctctgagaggaatccctgtactataagaattgaacactgtagttttctatccaaac 336

                                                                       
Query: 121 agaccctcagaactttgattgaatcagtgatgataattcatatgtagaaagttataatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agaccctcagaactttgattgaatcagtgatgataattcatatgtagaaagttataatgt 276

                                                                       
Query: 181 gacttaactcccccaaatggtgagtaaatttattaactactttctctgtgctagagacct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 gacttaactcccccaaatggtgagtaaatttattaactactttctctgtgctagaggcct 216

                                                                       
Query: 241 ttctaaggttttgtttttgttctaatttgcttgctattgttttgataaagacaccataac 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttctaaggttttgttattgttctaatttgcttgctattgttttgataaagacaccataac 156

                                                                       
Query: 301 caatagccttttgagaaaggaagggtttatttagcttacatcctgaccacagtctaccat 360
           ||| ||||| |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 155 caaaagcctcttgagaaaggaaaggtttattcagcttacatcctgatcacagtctaccat 96

                        
Query: 361 tttgggacaccaa 373
           |||||||||||||
Sbjct: 95  tttgggacaccaa 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)