BAC Information

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BAC

Clone NameMSMg01-448C22
Chromosome11 (Build37)
Map Location 92,865,152 - 92,865,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545
Downstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C22.T7 (MSMg01no448_c22.b1)MSMg01-448C22.TJ (MSMg01no448_c22.g1)
ACCAG536457AG536458
length630768
length of high quality
(start - end)
---429 (76 - 504)
definitionCHROMAT_FILE: MSMg01no448_c22.b1 PHD_FILE: MSMg01no448_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:21 2005CHROMAT_FILE: MSMg01no448_c22.g1 PHD_FILE: MSMg01no448_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTTCATAATTTGGGCGCTAAACGACTCCTATAGTTCGAGGATGCGC
GGAATTCAATGCAGTTCCCCCTCTATGGGAAANNNNAAANAAAAAAAAAA
AAANNAAAAAAAAAAAAAAAAAANNNANACCCANNNNTTAAAAANAAANA
AAAATAACAAAAAATTCCNTTNNNNNNNNNAAAGGGCAATAAAACCCCAT
AAGGGGTTTTAAAAAGGGGTAAAAACCGATGGGGTTTCCCCCTCCCCCTN
ACAATTTTTAAGGGTGTGGGGGCCTTTTTCNTTTTTTTTGGGGGGGCGGC
CCCCCCAAATTTTTCCCCCCCGCAANAATCNNNCCCCCTTCCACCAAGGG
CCTGGGAATTTACTGGCCGGCCCCCGGGTAACCCTCCCAAGGGGCCCAAA
ACCAAAAAATGGGGGGGCCCCGGGGAGGGGTTTTTTAAGGGGCCCCCCCC
CCCGTGTGGGGGAAAAAAAAAATGTGTGGCCCCTTTTTTTGGGCGGGGGG
GGGGGGGCCCAAAAAAAAAATTTTGGGGGGGGGGTGGCCCCCCCGGGGGG
GACCCCCCCTTTTTTTTTATTTAAGGAGCGCCCCCCCCCCGGGGGGGGTG
TGCCTACAAAAAAAAAAAATTTTACCCTAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATAATTAGGCAGTAGAGCTTGAG
TCAGGAAAAGATAGATAATAGAAAGTAAGCTGCTTTCCTTAAATATCACT
GTTTCTCCTATCCCACATTTTCTTTTATATGGTTCAGACTCTGTCTTACA
TCATGTATAATTCAATTGCTATAATTTGTTGCCTGTTTTGCCTCCCCAGC
TATAAACTTAAAATGACCTACAACGCTCAGTTCATTCTGGGTCTTGTCAT
TTTCTGTGAGAAGTTTCTGTATTGTATTAGTAGTTACTGAATCATGACAA
ACAGGCTTAAAATAATCTGGAATGTTGTGACTTGTTGTCAATATGTTTCC
TCCCTGTGTGGCCAGGCCAGAAGAGGTCTAGATGGTGTGAATCTTTTGGG
AGCTAGAACTGGGGTATGGAGGACATATGAATCATTTGATGAAAAACTAA
ACCAAACCAAACCAAACCAACCAACCAAACAAACAAACAATTCCAGGCAC
ATGCAAAAGGAAACTTTATTGTTGAGTTGAAGAGCCCAAAGCAAAAGTTT
TTAAAAATGGCTCATCTCCTATAGGGCAAGCCCAAAATAAGATAGGGGGG
TTACTTCCCTTGGTGTTATTGGGGGTAGTGTTTCCCCTATCTTTCCCTAT
TTATTCTTATTAATAACCTGGCCTCCTTAATCTATTTTGGTTTTTTAATA
TCCCACCTTTTCAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c22.g1 MSMg01no448_c22.g1 CHROMAT_FILE:
MSMg01no448_c22.g1 PHD_FILE: MSMg01no448_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:21 2005
         (429 letters)



>mm_chr11_92864952_92865780
          Length = 829

 Score =  822 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataattaggcagtagagcttgagtcaggaaaagatagataatagaaagtaagctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atataattaggcagtagagcttgagtcaggaaaagatagataatagaaagtaagctgctt 570

                                                                       
Query: 61  tccttaaatatcactgtttctcctatcccacattttcttttatatggttcagactctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tccttaaatatcactgtttctcctatcccacattttcttttatatggttcagactctgtc 510

                                                                       
Query: 121 ttacatcatgtataattcaattgctataatttgttgcctgttttgcctccccagctataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttacatcatgtataattcaattgctataatttgttgcctgttttgcctccccagctataa 450

                                                                       
Query: 181 acttaaaatgacctacaacgctcagttcattctgggtcttgtcattttctgtgagaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acttaaaatgacctacaacgctcagttcattctgggtcttgtcattttctgtgagaagtt 390

                                                                       
Query: 241 tctgtattgtattagtagttactgaatcatgacaaacaggcttaaaataatctggaatgt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctgtatagtattagtagttactgaatcatgacaaacaggcttaaaataatctggaatgt 330

                                                                       
Query: 301 tgtgacttgttgtcaatatgtttcctccctgtgtggccaggccagaagaggtctagatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtgacttgttgtcaatatgtttcctccctgtgtggccaggccagaagaggtctagatgg 270

                                                                       
Query: 361 tgtgaatcttttgggagctagaactggggtatggaggacatatgaatcatttgatgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtgaatcttttgggagctagaactggggtatggaggacatatgaatcatttgatgaaaa 210

                    
Query: 421 actaaacca 429
           |||||||||
Sbjct: 209 actaaacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)