Query= MSMg01no448_m12.b1 MSMg01no448_m12.b1 CHROMAT_FILE:
MSMg01no448_m12.b1 PHD_FILE: MSMg01no448_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:10 2005
(317 letters)
>mm_chr11_42205029_42205745
Length = 717
Score = 482 bits (249), Expect = e-140
Identities = 307/351 (87%), Gaps = 38/351 (10%)
Strand = Plus / Minus
Query: 5 gaattcaccctactgtttccagaaatttgagttttaagaaaaatatcagcttaatatgtc 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattcaccctactgcctccagaaatttgagttttaagaaaaatatcagcttaatatgtc 311
Query: 65 tttatgtatacaactgaaaatacctaagctgatcagttttaaaaggattacaagattgaa 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 310 tttatgtatacaactgaaaatacctaagctgatcaattttaaaaggattacaagattgaa 251
Query: 125 tatagaaacttagtcttaaatctctcccttgcaaatc----------------------- 161
||||||||||||||||| |||||||||||||||||
Sbjct: 250 tatagaaacttagtcttgtctctctcccttgcaaatcatatatatatatatatatatata 191
Query: 162 ---------------atatatatacatacacttttggttattatctttaaattgtcaagt 206
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tatatatatatatatatatatatacatacacttttggttattatctttaaattgtcaagt 131
Query: 207 ataggggtccaactactctctattttctcctatttgtggataccttgtgagggaaaaagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ataggggtccaactactctctattttctcctatttgtggataccttgtgagggaaaaagc 71
Query: 267 tgagaggagagatgtaagggagagagtgaagggtagagagagtgaagagag 317
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tgagaggagagatgtaagggagagagtgaagggtagagagagtgaagagag 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_m12.g1 MSMg01no448_m12.g1 CHROMAT_FILE:
MSMg01no448_m12.g1 PHD_FILE: MSMg01no448_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:10 2005
(417 letters)
>mm_chr11_42052443_42053263
Length = 821
Score = 714 bits (369), Expect = 0.0
Identities = 406/427 (95%), Gaps = 16/427 (3%)
Strand = Plus / Plus
Query: 1 ctcttggaaccaattccttgatctggacggataagtttatagcaaagttgttccttcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttggaaccaattccttgatctggacggataagtttatagcaaagttgttccttcagt 260
Query: 61 tcaggacctaagatctataaagtgtggttaatggtgtcctgcaggagtttgtccaaagag 120
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tcaggacctaagatccataaagtatggttaatggtgtcctgtaggagtttgtccaaagag 320
Query: 121 tcaaggtcctttgcaagggcctttccctaactgcctggattcctttaacaccttgtctca 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tcaaggtcctttgtaagggcctttccctaactgcctggattcctttaacaccttatctca 380
Query: 181 taatcttacaggatttacagtccagtagagggaagtaaatcaaattctttgacatccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatcttacaggatttacagtccagtagagggaagtaaatcaaattctttgacatccata 440
Query: 241 atttttt------attaaatgtcactgattgagttgggaaagctaggattttttttttt- 293
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a------ggccaaattaaatgtcactgattgagttgggaaagctaggatttttttttttt 494
Query: 294 ---gatatctcaacgtccattccattccatttgacctaaaatgaatttgtaggaaggaac 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttgatatctcaacgtccattccattccatttgacctaaaatgaatttgtaggaaggaac 554
Query: 351 tcagtcttcatggatccttctgccttttgaacaaagaactattttgctttacttttttcc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcagtcttcatggatccttctgccttttgaacaaagaactattttgctttacttttttcc 614
Query: 411 ccttggg 417
|||||||
Sbjct: 615 ccttggg 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 821
Length adjustment: 9
Effective length of query: 408
Effective length of database: 812
Effective search space: 331296
Effective search space used: 331296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
