BAC Information

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BAC

Clone NameMSMg01-448M19
Chromosome11 (Build37)
Map Location 29,127,814 - 29,128,105
singlet/doubletsinglet
Overlap geneCcdc104
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972
Downstream geneLOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M19.T7 (MSMg01no448_m19.b1)MSMg01-448M19.TJ (MSMg01no448_m19.g1)
ACCAG536926AG536927
length789793
length of high quality
(start - end)
397 (41 - 437)307 (51 - 357)
definitionCHROMAT_FILE: MSMg01no448_m19.b1 PHD_FILE: MSMg01no448_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005CHROMAT_FILE: MSMg01no448_m19.g1 PHD_FILE: MSMg01no448_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTATCTCTTTACCCCATTTTTTTTTTTTTTCTGATCAAGGCTCAA
ATTTTATTGTTGCGACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATT
CCCACCGAATAATCTCTGGTCCCTTTACCCCATTTTTTAATATGGTTATT
TGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTA
GTCCCCTATGTGATTTAGGATTGGTATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTACGAAGCTTTGAAATTTTA
TAAGGTCCCATTTGTCAATTCTCAAGTCATTGCTGATCCGTTCAGGGTTT
TTTCCCCTATGCCAATATCCTTGAGGTTCCTCCCCCCACCCCGCTTTCTC
CTCTACAAGTTTCTTCGCCTCTGTGTCTATATGGAGTTCCCCCGATCTTC
CTTTCTTCGATCTTCTTCCTCTGCGCCCATTACGTTCCTATTTCCCTTTC
TTTCCTTCTGCTACCTTCCAGCTGGTTTCCGCCTATTTTTTATAAATTGC
TGGCTCGTACATCTTAATTCCCAATATACCCCCGATATCCCCACCCCCTC
CTTTTCCAAAGGGCGCTCGCACTACCTTTTATCCGTTTTTTTAAGCCTCG
TTTTGTTCGCGTGAATTAGTTTTCCTATTCTCCCCCTTTTCGTTTCTCAT
TTCTCTCCTTCTCATCATCTTTTTTGCTGCCCCTTTTTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAATATGAGGTG
AACTATAGAAGTTTCGCGAAATTCTCTAATATAGTATATGAGTGGTAACA
CTATTTTTGACATGATACTCTGGACCTTTACTATGAAAAGCAACCAGTAT
GTTGCTCAACTACTATATAATTAACTTTCTTTTTCCTTCCCCCCCTTTTT
ATTATTTATTTATTTATTTATTTATTTTTGGTTTTTCAAGACAGGGTTTT
TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGCTGGCC
TCAAATTCAGAAATCTGCTCGTTTCTGCCTCCCAAGTGCTGGGATTAAAG
GTGTGTGTTTTCACTGCCAGGCTCAGTAATTATTTTTTAAGAAAGTATAA
AGTAACTCTTGCCACACATTTTTTTTTGAGCCCGCATTGGGCGGTCAAAC
CCTCTAACCCCTGTTCTCGGGAATTAGGGCCCCTGTACATGGGATGTTAG
GGTTCCATCCAGATTACATTATACCCCCTTTTTCTTTCCATTATCAAAAT
TTTCTCCTCAACGTCATCACTCCTCGCGTTTGCCTTCTTTATTTTGTCCC
CCTCCACAACCCTTCCGGAGTCAAGACGCGCCCCTTTTTATGGCTGTCAT
TTTTTTTTTTTTTTTTTTTCTCTCCCCTCGTCCGTGCATTCGTCTCTCGC
CAAATAAAGACTTCTTCGTACCTGTCGCGTCCCGTCCGCATTACGCTAGA
ACCCACCCCTTGTTTTTTTCCGCCCCTCTCCCCACCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m19.g1 MSMg01no448_m19.g1 CHROMAT_FILE:
MSMg01no448_m19.g1 PHD_FILE: MSMg01no448_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:12 2005
         (307 letters)



>mm_chr11_29127595_29128301
          Length = 707

 Score =  487 bits (252), Expect = e-142
 Identities = 281/296 (94%), Gaps = 12/296 (4%)
 Strand = Plus / Plus

                                                                       
Query: 20  aattctctaatatagtatatgagtggtaacactatttttgacatgatactctggaccttt 79
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 220 aattctctaatatagtatatgagtggtaatactatttttgacatgatactctggaccttt 279

                                                                       
Query: 80  actatgaaaagcaaccagtatgttgctcaactactatataattaactttctttttccttc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 actatgaaaagcaaccagtatgttgctcaactactatataattaactttctttttccttc 339

                                                                       
Query: 140 cccccctttttattatttatttatttatttatttattt----ttggtttttcaagacagg 195
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 340 cccccctttttattatttatttatttatttatttatttatttttggtttttcaagacagg 399

                                                                       
Query: 196 gtttttctgtgtagccctggctgtcctggaactcactctgtagaccaagctggcctcaaa 255
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtttcactgtgtagccctggctgtcctggaactcactctgtagaccaagctggcctcaaa 459

                                                                   
Query: 256 ttcagaaatc----tgctcgtttctgcctcccaagtgctgggattaaaggtgtgtg 307
           ||||||||||    ||| |   ||||||||||||||||||||||||||||||||||
Sbjct: 460 ttcagaaatccgcctgc-c---tctgcctcccaagtgctgggattaaaggtgtgtg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)