BAC Information

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BAC

Clone NameMSMg01-448N13
Chromosome11 (Build37)
Map Location 118,690,637 - 118,690,879
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneAfmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448N13.T7 (MSMg01no448_n13.b1)MSMg01-448N13.TJ (MSMg01no448_n13.g1)
ACCAG536962AG536963
length800760
length of high quality
(start - end)
243 (75 - 317)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no448_n13.b1 PHD_FILE: MSMg01no448_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:15 2005CHROMAT_FILE: MSMg01no448_n13.g1 PHD_FILE: MSMg01no448_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTAATTTGTGGCGCTAAAAGAANANTATAGTTTCAGCATCCGCGGAT
TCAACAGACTTTCCGATGAAATCGCTTTTTAAGGTGTGTCCTTAGTTTCT
GCGTGGGGTGAATAGAAAAGTCACACAACACCCTGAAGATCCCAGCACTC
CTGCAGCAAGATGGCAGGCCAAGATAGGAGACTCTCTGGGAGCTCACGGG
CCAGCTGGTCTGGTACAGACAATGACGAAGCAACAGAGACCCTTTCTCAA
CTAGGCAGAAGGTGAATAACACCCAAGGTTAACCTCTGACCTTTGTATGT
GTGCAATGATACATGCAGGTTTTTCCTGGGCTCACAGGAATGCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCT
CTCACTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCATCACCACACC
TTTTTCTAGCACATCTTTCGTTCCCACTTCCTTATCCCCTTATCCCTGTT
CCCTGTTGCTTCTTCTGTTTTCATCTTTCCTACCCCGCCTCTATACCTGT
CATCCCTTCCCTCGTTCTTTCCCCTTTCTCCCATAAACTTTCCTTAAAAT
TTTAACAACTTTCCTCCGCTCTCTTACCTTGCTCTGTCTATTCCTCTCCA
TTTTTCTCTTTCACCCCCTCCGCCCCCCCAATTTCTCCCTACTTTATGTT
CTCCCCACCCCTTTACCTTTCCCTCTTTTCTGCTCCCATATCGCTCCTCT
TTTATACTCCCAATCCTATACACACATCCGTTATTCCACTACTTTTATCC

NNNCCAATGAAGTGGGAGGCCTGGCGGNCGCCTGGTTCTCAAATTTAGGT
GAACTATAGAATTTCAGCGGAATTCTGATTCCCCTGTCTCCACTCCTCAG
GTTCTGGGATTATGTAGGCCTGCCCCACCGTGTGCAGTTTATGCTGAGAT
CTAACTTGGTGCTCTGTGCATGCCGGGCAAGCACTCTAACAACTGAGCTA
CCTCCTCAGCCCCTGTGTGCGGTTTTTGTGCGTAGCTGTGGCTGGTTGAA
GAGTGGACTCTGGAAGATACCACACCTTAGTCCCTAGAATGCGTGCACAT
TGCCATGTGTGAGTGTGGTTTTCCGGGTGGAGACTTCCTGCACCACCTAG
ACGAGCACTGTACAGTCAATCATTTCAAGTGTTCTTGAGAGGGAGGCAGG
GGGACATTTGACTGACAAAAGAGAAGCTTTTGTGACCCCAGAGACAGAGG
TTGAAGGGATATAGTCACAGGCTGAGAGATGCCCGAGGTCTCCAGAGATA
GCAGGAGGCAGGAAGACCCCTCCTTCCAAGCTGCTGAAAGCTCTTGTCAA
CTCCTTTGAAGGCTGGTGAAACTGAATCGGGCCTTGTGGCCCCCCGCTGG
GGTTGGGAGGGTTCTCGCTGCCACCCACACTATTCGGGGCATTTTATGTT
ATTTATAACCCCTACCCACGGCCCAAAGAAAGGGCCCCTCCCGGTTAAAA
ACCACCTCTTCTTAACCGTAATATCCTTTTGTGGTTCCCCTTCCGAGTAT
AATTCGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_n13.g1 MSMg01no448_n13.g1 CHROMAT_FILE:
MSMg01no448_n13.g1 PHD_FILE: MSMg01no448_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:15 2005
         (243 letters)



>mm_chr11_118690295_118690937
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgattcccctgtctccactcctcaggttctgggattatgtaggcctgccccaccgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 attctgattcccctgtctccactcctcaggttctgggattatgtaggcctgccccaccgt 526

                                                                       
Query: 61  gtgcagtttatgctgagatctaacttggtgctctgtgcatgccgggcaagcactctaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtgcagtttatgctgagatctaacttggtgctctgtgcatgccgggcaagcactctaaca 466

                                                                       
Query: 121 actgagctacctcctcagcccctgtgtgcggtttttgtgcgtagctgtggctggttgaag 180
           | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 465 aatgagctacctcctcagcccctgtgtgcagtttttgtgcgtagctgtggctggttgaag 406

                                                                       
Query: 181 agtggactctggaagataccacaccttagtccctagaatgcgtgcacattgccatgtgtg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtggactccggaagataccacaccttagtccctagaatgcgtgcacattgccatgtgtg 346

              
Query: 241 agt 243
           |||
Sbjct: 345 agt 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)