MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-448O24
Chromosome	11 (Build37)
Map Location	93,121,700 - 93,307,424
singlet/doublet	doublet
Overlap gene	Car10
Upstream gene	LOC382545, LOC100039286
Downstream gene	LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC382545 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382545
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039286 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039286
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs

name	Car10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72605 MGI:1919855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC629636 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629636
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Utp18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217109 MGI:1923402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mbtd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103537 MGI:2143977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nme2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18103 MGI:97356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Nme1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18102 MGI:97355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spag9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70834 MGI:1918084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC100039431 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039431
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 764 ESTs, 6 Proteins

name	LOC100039440 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tob1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22057 MGI:1349721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wfikkn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:278507 MGI:2669209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3300001P08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67684 MGI:1914934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd40 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71452 MGI:1918702
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Abcc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76408 MGI:1923658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacna1g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12291 MGI:1201678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039286 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262378 GeneID:100039286
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs product : hypothetical protein LOC100039286 transcript_id : XM_001472611.1

name	Car10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625805 GeneID:72605 MGI:1919855
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anhydrase 10 transcript_id : NM_028296.2

name	Utp18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61656179 GeneID:217109 MGI:1923402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UTP18, small subunit (SSU) processome component, homolog (yeast) transcript_id : NM_001013375.1

name	Mbtd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892941 GeneID:103537 MGI:2143977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mbt domain containing 1 transcript_id : NM_134012.2

name	Nme2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606273 GeneID:18103 MGI:97356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed in non-metastatic cells 2, protein transcript_id : NM_008705.4

name	Nme2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606269 GeneID:18103 MGI:97356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed in non-metastatic cells 2, protein transcript_id : NM_001077529.1

name	Nme1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38327645 GeneID:18102 MGI:97355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed in non-metastatic cells 1, protein transcript_id : NM_008704.2

name	Spag9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70887771 GeneID:70834 MGI:1918084
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm associated antigen 9 transcript_id : NM_027569.2

name	LOC100039431 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262382 GeneID:100039431
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 764 ESTs, 6 Proteins product : similar to ribosomal protein L27 transcript_id : XM_001473193.1

name	Spag9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70887775 GeneID:70834 MGI:1918084
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm associated antigen 9 transcript_id : NM_001025429.1

name	Spag9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70887777 GeneID:70834 MGI:1918084
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm associated antigen 9 transcript_id : NM_001025428.1

name	Spag9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70887783 GeneID:70834 MGI:1918084
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm associated antigen 9 transcript_id : NM_001025430.1

name	LOC100039440 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262386 GeneID:100039440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039440 transcript_id : XM_001473216.1

name	Tob1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61676218 GeneID:22057 MGI:1349721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transducer of ErbB-2.1 transcript_id : NM_009427.2

name	Wfikkn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32451493 GeneID:278507 MGI:2669209
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 transcript_id : NM_181819.1

name	3300001P08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956165 GeneID:67684 MGI:1914934
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3300001P08 gene transcript_id : NM_026313.1

name	Ankrd40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656160 GeneID:71452 MGI:1918702
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 40 transcript_id : NM_027799.2

name	Ankrd40 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656166 GeneID:71452 MGI:1918702
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 40 transcript_id : NM_146024.1

name	Abcc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90403594 GeneID:76408 MGI:1923658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family C (CFTR/MRP), member 3 transcript_id : NM_029600.3

name	Cacna1g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753231 GeneID:12291 MGI:1201678
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, T type, alpha 1G subunit transcript_id : NM_009783.1

name	LOC100039286 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262379 GeneID:100039286
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472661.1

name	Car10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037303 CCDS:CCDS25244.1 GeneID:72605 MGI:1919855
definition	codon_start : 1 note : carbonic anhydrase-related protein 10; CA-RP X product : carbonic anhydrase 10 protein_id : NP_082572.1

name	Utp18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656180 CCDS:CCDS25245.1 GeneID:217109 MGI:1923402
definition	codon_start : 1 product : WD repeat domain 50 protein_id : NP_001013393.1

name	Mbtd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527230 GeneID:103537 MGI:2143977
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : mbt domain containing 1 protein_id : NP_598773.1

name	Nme2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606270 GeneID:18103 MGI:97356
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006241 - CTP biosynthesis [Evidence IEA]; GO:0006183 - GTP biosynthesis [Evidence IEA]; GO:0009117 - nucleotide metabolism [Evidence IEA]; GO:0009209 - pyrimidine ribonucleoside triphosphate biosynthesis [Evidence IEA]; GO:0006228 - UTP biosynthesis [Evidence IEA] codon_start : 1 note : nucleoside diphosphate kinase B; expressed in non-metastatic cells 2 protein product : nucleoside-diphosphate kinase 2 protein_id : NP_001070997.1

name	Nme2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679078 CCDS:CCDS25246.1 GeneID:18103 MGI:97356
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006241 - CTP biosynthesis [Evidence IEA]; GO:0006183 - GTP biosynthesis [Evidence IEA]; GO:0009117 - nucleotide metabolism [Evidence IEA]; GO:0009209 - pyrimidine ribonucleoside triphosphate biosynthesis [Evidence IEA]; GO:0006228 - UTP biosynthesis [Evidence IEA] codon_start : 1 note : nucleoside diphosphate kinase B; expressed in non-metastatic cells 2 protein product : nucleoside-diphosphate kinase 2 protein_id : NP_032731.1

name	Nme1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37700232 CCDS:CCDS25247.1 GeneID:18102 MGI:97355
definition	GO_component : GO:0005792 - microsome [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006241 - CTP biosynthesis [Evidence IEA]; GO:0006183 - GTP biosynthesis [Evidence IEA]; GO:0007595 - lactation [Evidence IMP]; GO:0030879 - mammary gland development [Evidence IMP]; GO:0009117 - nucleotide metabolism [Evidence IEA]; GO:0009209 - pyrimidine ribonucleoside triphosphate biosynthesis [Evidence IEA]; GO:0006228 - UTP biosynthesis [Evidence IEA] codon_start : 1 note : nucleotide diphosphate kinase; expressed in non-metastatic cells 1 protein; nucleoside diphosphate kinase product : nucleoside-diphosphate kinase 1 protein_id : NP_032730.1

name	Spag9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887772 CCDS:CCDS25248.1 GeneID:70834 MGI:1918084
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0008432 - JUN kinase binding [Evidence IDA]; GO:0019894 - kinesin binding [Evidence IDA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0051260 - protein homooligomerization [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; JNK-associated leucine-zipper; JNK-interacting protein 4 product : sperm associated antigen 9 isoform 1 protein_id : NP_081845.2

name	LOC100039431 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262383 GeneID:100039431
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473243.1

name	Spag9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887776 GeneID:70834 MGI:1918084
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0008432 - JUN kinase binding [Evidence IDA]; GO:0019894 - kinesin binding [Evidence IDA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0051260 - protein homooligomerization [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; JNK-associated leucine-zipper; JNK-interacting protein 4 product : sperm associated antigen 9 isoform 3 protein_id : NP_001020600.1

name	Spag9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887778 GeneID:70834 MGI:1918084
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0008432 - JUN kinase binding [Evidence IDA]; GO:0019894 - kinesin binding [Evidence IDA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0051260 - protein homooligomerization [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; JNK-associated leucine-zipper; JNK-interacting protein 4 product : sperm associated antigen 9 isoform 2 protein_id : NP_001020599.1

name	Spag9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887784 CCDS:CCDS25249.1 GeneID:70834 MGI:1918084
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0008432 - JUN kinase binding [Evidence IDA]; GO:0019894 - kinesin binding [Evidence IDA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0051260 - protein homooligomerization [Evidence IDA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; JNK-associated leucine-zipper; JNK-interacting protein 4 product : sperm associated antigen 9 isoform 4 protein_id : NP_001020601.1

name	LOC100039440 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262387 GeneID:100039440
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473266.1

name	Tob1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61676219 CCDS:CCDS25250.1 GeneID:22057 MGI:1349721
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0046332 - SMAD binding [Evidence IDA]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0030514 - negative regulation of BMP signaling pathway [Evidence IDA]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence IMP]; GO:0007184 - SMAD protein nuclear translocation [Evidence IDA] codon_start : 1 note : transducer of erbB2 product : transducer of ErbB-2.1 protein_id : NP_033453.2

name	Wfikkn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32451494 CCDS:CCDS25251.1 GeneID:278507 MGI:2669209
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 exception : mismatches in translation note : WFIKKN-like; growth and differentiation factor-associated serum protein 1 product : WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein_id : NP_861540.1

name	3300001P08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956166 CCDS:CCDS25252.1 GeneID:67684 MGI:1914934
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : cisplatin resistance-associated overexpressed protein protein_id : NP_080589.1

name	Ankrd40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656161 CCDS:CCDS25253.1 GeneID:71452 MGI:1918702
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; granule cell antiserum positive 15 product : ankyrin repeat domain 40 isoform 1 protein_id : NP_082075.2

name	Ankrd40 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656167 GeneID:71452 MGI:1918702
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; granule cell antiserum positive 15 product : ankyrin repeat domain 40 isoform 2 protein_id : NP_666136.1

name	Abcc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:90403595 CCDS:CCDS25254.1 GeneID:76408 MGI:1923658
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS] [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0015722 - canalicular bile acid transport [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transporter; ATP-binding cassette protein C3; ATP-binding cassette transporter; multidrug resistance-associated protein 3 product : ATP-binding cassette, sub-family C (CFTR/MRP), member 3 protein_id : NP_083876.3

name	Cacna1g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753232 CCDS:CCDS25255.1 GeneID:12291 MGI:1201678
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005245 - voltage-gated calcium channel activity [Evidence IDA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : calcium channel, voltage-dependent, T type, alpha 1G subunit protein_id : NP_033913.1

name	LOC382545 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:382545
definition	number : 1 pseudo : _no_value

name	LOC629636 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629636
definition	number : 1 pseudo : _no_value

name	LOC629636 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629636
definition	number : 2 pseudo : _no_value

clone name	MSMg01-471J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101D24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-163F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478M07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-534K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271G01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-440O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413P04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-333O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065O17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-448O24.T7 (MSMg01no448_o24.b1)	MSMg01-448O24.TJ (MSMg01no448_o24.g1)
ACC	AG537032	AG537033
length	786	855
length of high quality (start - end)	363 (42 - 404)	213 (80 - 292)
definition	CHROMAT_FILE: MSMg01no448_o24.b1 PHD_FILE: MSMg01no448_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:23 2005	CHROMAT_FILE: MSMg01no448_o24.g1 PHD_FILE: MSMg01no448_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:23 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(93,307,077 - 93,307,424)	(93,121,700 - 93,121,908)
sequence	TCTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA TCCGCGGAATTCCCTAGCATTGCCACATTGGCTTTACCAAGAAGGGGATT GCCCAAGACCTTGGGATTGCAAGAATGAGTTCACTTGTTCTGCATAGGAA AGAAGAGCAAAACCACAAAGAATAGAAAGTATATAGGTAGTGGGATATTT AGACAGAACTGGGTTCAGATCCGGATTTTCAGAAGTCTTAACTTCTAAAT GACTAAATTGCATTTGCTGTAAAGGAACAACACGATGTCCCATGGTGTGG GTGGGGTAATGAAATGTTTGCAGACTACCCAGCCCAGAGTCTTATTTATT TTCAAAGCTGTACTTCTAGAGGACCCTTTTGGGCCTTTCCCTTGATATTT AGAGCTGGCTCTGGTACCATTTATTACGACCCAGATCCATGTTTGCAACT TACGGCCATGTGTGTGTTGCACCCACCCTTTTACTTTCTTACTTGCCCTT CTCGCTATTATTCGAACCTCGTGTTTGGGTTTTTTCTACCCTTGTGTGCT TTTTGTCTTTTCCGCACCATCTTCCACCTCTTTTTCTGTGCGCCCCTTGT GCTCCCCTCCCGTTTTATCTTTTTACCTACCTTTTTTTCCATCTTTTCCC TGGCCTCCTTTTTTTTTTCCTCCCTTCCCCTCTTTTTTCCTTCTCCCCTC TGCCTTTTACCCCTCTTGTTTCCCCCCTTTTTATTATTGCCATCCCCGGC ATGCTACCTTCTTTTTTGTTCTTCTTTTCGCCCCCC	NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCTGCAATTTCTTTGAT CTCTAATCTAGAATGAGAATTTTTCCAAAGGTGTCTTGAGTTCCTAATAC TTTTATATAATATGTTCAGGTCAGCTGCGAAAAATCTTAGGGTGAAAAAT AAACCTATAAATTCAGCTTGTGTTCTGATATGATCTTATTCCTTTAAAAT TGTTTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTNNNNNNNTT NTTNNTTNNNNNNNNNNTTNTTTTTTTTTTTTTTTTTTTNTTTTTNCTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTNTTTTTTTTNNTTTTNTTT TTTTTTTTTTTTTTTCCCTTTCCTTCTTNCTTCTCCTTTCTCTTCCTCTT CCCNTCTTCCCCTCTCCCTCCTCCTTTTTTTTTTTCCCCCCTTTTTTTTT TTTCTCTTCTTCCCCCCCCCCCTTTTTTTTTCCTTTTTTTTTCTCTTTTT TTTTCCTTTCTTTCTTCTCCCTCCCCTTTTTTTTCTTTTTTTTTTTCCTC TTCCTTTTTTTTTTTTTTTCCTTCTCCCTCTTCCCCCTTTCCCTTTCTTC TTCTTTTTTCTTNCTTCTCCTTTTCTCTTCTTTTCTCTCTTTCTTCTCTC CTTTTCTTCTCCTTCTTCCTTTTCTCTCCCTTTTTCTTCTCTCCCTTTCT TTCTTTTCCTTTTTTTCCTTTCTCTCCCCTCCCTCTCTTCCTCTTTTTCT TCTCTTCTNTTCTCTTTCTTCTTCTTCTTCTCTCTCTCTTCCTTTCCTTT TTTTN
quality values	Open. Hide. 8 8 10 15 22 11 9 7 9 9 8 8 8 10 12 19 14 10 8 8 8 8 13 17 25 19 19 35 18 22 20 28 21 28 33 33 33 27 25 18 12 11 12 12 9 12 15 14 14 22 24 24 24 43 43 43 28 28 24 24 26 30 59 59 41 22 19 11 11 11 12 9 9 10 11 14 22 37 41 40 47 48 48 48 53 50 50 47 50 50 47 48 48 50 50 47 47 42 42 42 50 48 48 42 42 42 42 57 68 68 68 68 68 50 50 46 46 42 42 37 44 44 50 50 50 47 50 47 48 48 48 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 43 43 44 44 43 44 57 57 44 43 43 44 57 57 57 57 50 48 48 50 50 50 50 50 38 38 52 57 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 50 41 41 50 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 59 59 59 59 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 43 52 57 57 59 59 59 59 68 59 68 68 59 59 59 57 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 59 59 52 52 52 57 57 52 52 52 52 52 57 54 57 57 52 52 52 57 57 57 59 57 50 50 39 39 37 43 43 43 35 35 43 36 36 24 22 17 17 19 24 36 36 28 28 28 28 28 35 42 42 44 44 57 57 57 57 57 36 36 18 18 11 12 12 18 23 13 14 14 30 34 40 28 25 25 37 33 43 37 37 35 35 35 35 35 37 28 28 14 12 12 15 21 24 31 32 37 43 47 47 43 37 37 43 37 26 19 10 10 9 10 12 14 10 11 13 25 23 15 10 7 7 8 13 14 23 23 34 32 39 26 28 19 13 11 12 14 11 11 11 10 10 8 8 8 10 8 12 12 21 22 15 12 11 11 8 6 6 6 6 8 11 11 11 11 11 15 10 8 6 6 8 8 8 11 12 12 11 11 15 8 8 8 8 10 18 20 22 8 8 6 6 12 11 10 11 8 11 10 10 10 10 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 10 10 10 10 10 10 10 10 13 15 8 8 8 8 8 8 11 11 10 12 15 15 9 9 9 10 9 11 11 12 10 10 12 12 7 7 8 6 8 8 8 13 10 8 8 8 13 9 10 13 11 16 8 8 8 8 8 10 8 8 8 8 10 10 9 9 9 12 12 11 11 11 9 12 10 10 8 8 8 8 8 10 10 10 10 10 12 8 8 8 8 8 10 10 9 8 8 9 10 8 8 8 8 8 17 8 8 8 8 8 8 15 21 11 11 9 15 13 9 9 10 9 11 11 10 12 10 8 8 8 6 6 10 10 8 8 11 11 8 8 8 6 6 8 10 8 8 8 8 8 10 13 10 10 10 11 11 7 12 7 7 8 6 10 10 13 12 11 11 11 10 10 9 8 10 8 9 10 10 10 8 8 9 9 9 10 10 8 8 9 9 9 9 9 19 13 18 8 8 8 10 12 8 9 6 8 6 11 10 15 15 15 14 13 11 10 10 10 8 10 10 11 11 8 8 8 8 8 8 8 8 8 8 13 13 14 9 8 8 6 6 8 8 8 8 7 7 8 7 12 14 12 12 10 9 13 8 8 8 8 8 8 17 15 19 20 13 13 7 7 7 12 11 10 10 10	Open. Hide. 0 0 0 3 7 7 8 10 12 11 8 8 6 7 9 9 13 14 24 24 26 31 39 37 37 37 37 37 31 31 37 30 31 25 25 11 9 9 10 10 9 9 9 13 13 28 27 41 40 48 48 37 37 39 39 39 44 44 59 57 57 50 32 27 12 10 12 12 26 21 25 25 34 21 29 36 40 42 48 54 54 47 50 50 51 53 53 57 57 57 54 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 47 47 47 48 48 50 51 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 50 50 50 51 50 50 57 52 52 59 59 59 57 57 57 50 50 50 50 50 50 59 59 59 59 68 59 68 68 68 68 68 68 68 57 57 57 59 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 68 68 68 68 68 68 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 50 50 50 50 50 50 59 59 59 27 23 3 0 0 3 0 0 0 0 0 0 0 3 3 0 3 3 0 0 3 3 0 0 0 0 0 0 0 0 0 0 3 3 0 3 8 10 15 19 22 23 30 26 13 9 8 8 8 13 10 8 8 3 0 3 6 6 6 3 0 3 8 8 9 8 8 11 9 9 9 7 7 6 6 6 11 13 10 10 10 15 13 9 9 9 9 15 15 12 19 17 23 18 9 3 0 3 8 6 6 8 7 8 3 0 0 3 8 6 3 0 3 10 10 11 14 19 21 22 19 15 10 9 7 7 13 13 8 8 10 17 16 18 18 15 8 6 6 6 6 8 3 0 3 8 8 13 8 8 8 8 8 8 8 8 7 8 6 10 6 6 6 8 9 10 10 3 0 3 13 9 9 9 9 11 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 11 17 15 11 10 10 8 10 11 18 14 16 18 14 12 17 15 10 10 10 10 13 10 11 14 10 8 10 6 6 8 8 12 8 8 8 10 10 22 14 18 12 12 10 10 13 13 8 8 10 13 10 10 19 8 8 8 8 9 19 21 23 23 13 10 8 8 6 6 6 10 8 9 10 8 7 7 6 6 6 9 13 13 9 9 9 12 8 10 10 8 8 8 8 7 7 7 14 18 28 14 13 11 10 14 9 12 11 12 10 17 16 12 12 10 16 20 21 16 10 11 10 10 8 8 8 8 6 6 8 13 9 9 9 9 9 13 10 9 11 9 8 10 9 9 8 8 8 8 8 10 11 6 6 8 8 8 8 8 8 8 8 8 8 10 10 10 8 22 15 8 8 8 8 8 8 11 11 17 17 13 9 9 13 13 3 0 3 8 8 10 10 9 9 8 9 8 9 10 9 14 15 14 14 14 18 10 6 6 6 6 6 8 8 9 12 12 12 10 12 10 12 10 12 12 8 6 6 6 6 6 8 8 8 8 8 8 12 15 18 22 15 15 12 11 8 8 6 7 6 7 9 10 8 9 11 9 9 12 16 16 8 8 8 8 8 8 8 10 10 10 6 6 6 10 11 17 8 8 8 8 8 6 6 7 7 12 14 13 13 15 12 12 10 9 9 9 13 9 9 9 8 11 11 15 8 9 11 12 14 19 17 8 8 8 8 7 6 8 7 9 13 15 12 12 8 8 6 6 8 8 3 0 3 6 6 8 8 9 9 9 10 11 9 10 8 6 6 6 8 8 7 9 7 7 7 10 13 10 10 6 6 8 8 8 6 6 6 6 7 7 6 8 6 8 15 12 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no448_o24.b1 MSMg01no448_o24.b1 CHROMAT_FILE:
MSMg01no448_o24.b1 PHD_FILE: MSMg01no448_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:23 2005
         (363 letters)



>mm_chr11_93306862_93307624
          Length = 763

 Score =  565 bits (292), Expect = e-165
 Identities = 334/348 (95%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattccctagcattgccacattggctttaccaagaaggggattgcccaagaccttggga 75
           ||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||  ||
Sbjct: 563 gaattccctagcagtgggacactggctttaccaagaaggggattgcccaagaccttcaga 504

                                                                       
Query: 76  ttgcaagaatgagttcacttgttctgcataggaaagaagagcaaaaccacaaagaataga 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgcaagaatgagttcacttgttctgcataggaaagaagagcaaaaccacaaagaataga 444

                                                                       
Query: 136 aagtatataggtagtgggatatttagacagaactgggttcagatccggattttcagaagt 195
            || |||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct: 443 gagcatataggtagcgggatatgtagatagaactgggttcagacccggattttcagaagt 384

                                                                       
Query: 196 cttaacttctaaatgactaaattgcatttgctgtaaaggaacaacacgatgtcccatggt 255
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 cttaacttctaaatgactaaattgcatttgctgtaaaggaacaacatgatgtcccatggt 324

                                                                       
Query: 256 gtgggtggggtaatgaaatgtttgcagactacccagcccagagtcttatttattttcaaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgggtggggtaatgaaatgtttgcagactacccagcccagagtcttatttattttcaaa 264

                                                           
Query: 316 gctgtacttctagaggacccttttgggcctttcccttgatatttagag 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctatacttctagaggacccttttgggcctttcccttgatatttagag 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_o24.g1 MSMg01no448_o24.g1 CHROMAT_FILE:
MSMg01no448_o24.g1 PHD_FILE: MSMg01no448_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:23 2005
         (213 letters)



>mm_chr11_93121500_93122112
          Length = 613

 Score =  404 bits (209), Expect = e-117
 Identities = 209/209 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatctgcaatttctttgatctctaatctagaatgagaatttttccaaaggtgtcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatctgcaatttctttgatctctaatctagaatgagaatttttccaaaggtgtcttga 260

                                                                       
Query: 61  gttcctaatacttttatataatatgttcaggtcagctgcgaaaaatcttagggtgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcctaatacttttatataatatgttcaggtcagctgcgaaaaatcttagggtgaaaaa 320

                                                                       
Query: 121 taaacctataaattcagcttgtgttctgatatgatcttattcctttaaaattgtttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacctataaattcagcttgtgttctgatatgatcttattcctttaaaattgtttttat 380

                                        
Query: 181 ttgtgtgtgtgtgtgtgtgtgtgtgtgtg 209
           |||||||||||||||||||||||||||||
Sbjct: 381 ttgtgtgtgtgtgtgtgtgtgtgtgtgtg 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information