BAC Information

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BAC

Clone NameMSMg01-449F06
Chromosome11 (Build37)
Map Location 56,696,755 - 56,697,163
singlet/doubletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F06.T7 (MSMg01no449_f06.b1)MSMg01-449F06.TJ (MSMg01no449_f06.g1)
ACCAG537328AG537329
length761749
length of high quality
(start - end)
409 (76 - 484)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no449_f06.b1 PHD_FILE: MSMg01no449_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:55 2005CHROMAT_FILE: MSMg01no449_f06.g1 PHD_FILE: MSMg01no449_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAT
CCGCGGAATTCTCTGATTTCAACAATCTATTTTCCCTGATGGACTGTTCA
AAAGCTTTTAGACACGGGAGAATCGTTTCTTGAAGCTTTTTGTCTTGTTC
ACAATGTGATGACTCTGAACACTGTCCCTTGAAATTAGGCCCTGGAGGAT
TTCTTCTTAAATCATTGTATTTTTGAGTGCCTGTGTGTAGTATGTATGTC
TGTGAGCATGTGTGTGAGGGAGCCTGTGTGCCATGGCATAGTATGGAGGT
CAGAGGATGACCAAGAGTGTCTATGTTTGCCTTTGACCTGGACTCTTATT
TGCCACTCTATAGATACCAGGCTTACTGGTCTATGAGCTTCCAATGATTC
TCTCATATCAGCCTCCCAACTCACCATAAGTTAACAAAACTGAATTTGAA
GATGTATTACACACCATCCACCTTCAATTCTTACATACTTGGAAAATTGA
AAAAGAATTAAACTGAAGGTCCTATAAAATTTTTTTTTTAAAAAAAGGTT
CTTCAAATAAGCTCCAAAAAGGTGCGCCAATTTTTTTTATGTTTTCTCAA
AATAGAATCCTTTGAAGGGCCTAAAACTTTTTTCCTTGCTCTTTATTATT
CCTCGGTGGTGATGTGATCTGGTTTCTCACCACTAGTGTTTGTGATGCCC
CTCCCACCCTCCTTTATTTTTTTCCTTATCTTTAATCCCGCAATACCCTC
CAGAATACACA
TTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCAGAGACAATCTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTGTTTGATTTTCTCGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCC
TTGTTTAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAGCACAAGCCATTGCTGTTCTTTTCTGGAATTTTTCCCCTCATTCAG
CTTCTACATACATGTCTGAAGCATATGGATCCTTTATCATCTTATCTCCA
TCTATTTATCCAGTTGGCTGGAGCATGACTGTCCTCAGTCCAAGGTTATA
GGTTTTAATTACCAGTGATGTAAGTCAATCAGCTTGTACTATTCTGTAGA
CATGAGTCATGACCCTGTCCACCACCAATAGGCTGACTGACATTCTGACT
TTCAGATGTTCCAGTGTATAAGCTTTGTTGATGATCGCCTGGCAGACAGT
ATTGACTGCACACTTTGTGCTCACTTTTTATCTCTGATTAGTTTGTACCA
CGCTCATAATTTCTCTATTTTTTCTGTGGTTACTCCCTCTTCCTCTTTCT
TTGCTTTTATCTTCTCTCTCTTCCATAGGCACTTTCTTTCTTTACATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f06.b1 MSMg01no449_f06.b1 CHROMAT_FILE:
MSMg01no449_f06.b1 PHD_FILE: MSMg01no449_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:55 2005
         (409 letters)



>mm_chr11_56696555_56697363
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattttccctgatggactgttcaaaagcttttagacacgggagaatcgtttcttgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctattttccctgatggactgttcaaaagcttttagacacgggagaatcgtttcttgaag 260

                                                                       
Query: 61  ctttttgtcttgttcacaatgtgatgactctgaacactgtcccttgaaattaggccctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttgtcttgttcacaatgtgatgactctgaacactgtcccttgaaattaggccctgg 320

                                                                       
Query: 121 aggatttcttcttaaatcattgtatttttgagtgcctgtgtgtagtatgtatgtctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatttcttcttaaatcattgtatttttgagtgcctgtgtgtagtatgtatgtctgtga 380

                                                                       
Query: 181 gcatgtgtgtgagggagcctgtgtgccatggcatagtatggaggtcagaggatgaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgtgtgtgagggagcctgtgtgccatggcatagtatggaggtcagaggatgaccaag 440

                                                                       
Query: 241 agtgtctatgtttgcctttgacctggactcttatttgccactctatagataccaggctta 300
           |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 agtgtcaatgcttgcctttgacctggactcttatttgccactctatagataccaggctga 500

                                                                       
Query: 301 ctggtctatgagcttccaatgattctctcatatcagcctcccaactcaccataagttaac 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ctggtctatgagcttccaacgattctctcatatcagcctcccaactcaccataggttaac 560

                                                            
Query: 361 aaaactgaatttgaagatgtattacacaccatccaccttcaattcttac 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaactgaatttgaagatgtattacacaccatccaccttcaattcttac 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)