Query= MSMg01no450_d12.b1 MSMg01no450_d12.b1 CHROMAT_FILE:
MSMg01no450_d12.b1 PHD_FILE: MSMg01no450_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:03 2005
(491 letters)
>mm_chr11_84186711_84187596
Length = 886
Score = 687 bits (355), Expect = 0.0
Identities = 390/403 (96%), Gaps = 7/403 (1%)
Strand = Plus / Minus
Query: 85 tcaaggggctggaaagtggctagagcatttatttctcttgcattggacccgggtttagtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tcaaggggctggaaagtggctagagcatttatttctcttgcattggacccgggtttagtt 827
Query: 145 cccagcaccacatggtggctcacaaacatttgtaactccaggtccagggaacctggcgtt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cccagcaccacatggtggctcacaaacatttgtaactccaggtccagggaacctggcgtt 767
Query: 205 ctctgctggctaaagcaggcactaggcatacatgt-atggtacataaatacctggaggca 263
|||||||||||||||||||||| |||||||||||| || | |||||||||||||||||||
Sbjct: 766 ctctgctggctaaagcaggcaccaggcatacatgtaat-gcacataaatacctggaggca 708
Query: 264 aaacacccagatacatacaaaaaatagttttaaaaagtacataaacattaagctgtaatg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaacacccagatacatacaaaaaatagttttaaaaagtacataaacattaagctgtaatg 648
Query: 324 tacagtcaaagccttctccaggaagtggtatttctctaataaaaatggtctttttgacga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 647 tacagtcaaagccttctccaggaagtggtatttctctaataaaaatggtctttttgatga 588
Query: 384 ctccaaaacagtaaaagcaataaacaaacaaacaacccccccccccaaaaaaaaacaaac 443
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 587 ctgcaaaacagtaaaagcaataaacaaacaaacaacccccccccc-aaaaaaaaa---ac 532
Query: 444 cctaaactaaaacagtaacagcttttcattttctcaacgaggc 486
| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 531 c-taaaccaaaacagtaacagcttttcattttctcaatgaggc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 886
Length adjustment: 10
Effective length of query: 481
Effective length of database: 876
Effective search space: 421356
Effective search space used: 421356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_d12.g1 MSMg01no450_d12.g1 CHROMAT_FILE:
MSMg01no450_d12.g1 PHD_FILE: MSMg01no450_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:03 2005
(490 letters)
>mm_chr11_84001486_84002375
Length = 890
Score = 884 bits (457), Expect = 0.0
Identities = 482/491 (98%), Gaps = 2/491 (0%)
Strand = Plus / Plus
Query: 1 tagtctttagtggcatcttgagaaaga-tacatgggaggaaaataatttttaacttttta 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 tagtctttagtggcatcttgagaaagaatacatgggaggaaaataatttttaacttttta 259
Query: 60 tttaaaaaatttcagcttacaaagaataatgcaataaatatcaatgttcccttgatctag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaaaaaatttcagcttacaaagaataatgcaataaatatcaatgttcccttgatctag 319
Query: 120 attcatccatttttaacattttgtcacatttgctttactgctctcctattattatgtgta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcatccatttttaacattttgtcacatttgctttactgctctcctattattatgtgta 379
Query: 180 tggattatttttttangtgncttttcaaactaagctgaagaactcatacatacttctgct 239
|| |||||||||||| | | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtattatttttttatgagtcatttcaaactaagctgaagaactcatacatacttctgct 439
Query: 240 tatttcttttaataattaggacattttctggttcaagttcactcacttatgctaccccct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatttcttttaataattaggacattttctggttcaagttcactcacttatgctaccccct 499
Query: 300 catttaacataaatgtaacaatatgtgatttatatttccatttaatatttcttactcatc 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catttaacataaatgtaaaaatatgtgatttatatttccatttaatatttcttactcatc 559
Query: 360 tccttacttactcaataccttttcctttttccttttttttttttttggagatgggagcta 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 tccttacttactcaataccttttcctttttccttttttttttttt-ggagatgggagcta 618
Query: 420 tcctgaaacttaacacatagatcaagttagcctcaaactcacagcaatctgtgcctgcct 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 tcctgaaacttaacacatagatcaagttagcctcaaactcacagcaatctatgcctgcct 678
Query: 480 ctgcctcctga 490
|||||||||||
Sbjct: 679 ctgcctcctga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
