BAC Information

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BAC

Clone NameMSMg01-450J10
Chromosome11 (Build37)
Map Location 58,172,844 - 58,173,124
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l
Downstream gene2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450J10.T7 (MSMg01no450_j10.b1)MSMg01-450J10.TJ (MSMg01no450_j10.g1)
ACCAG538281AG538282
length764755
length of high quality
(start - end)
126 (127 - 252)281 (331 - 611)
definitionCHROMAT_FILE: MSMg01no450_j10.b1 PHD_FILE: MSMg01no450_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005CHROMAT_FILE: MSMg01no450_j10.g1 PHD_FILE: MSMg01no450_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTATCATCCGCCGGCGGAAAAGGAATCACAATCAATACACGGTGCG
NNGGAANNNATCTTTCCCAAACAGAAGGNCNAANANCAACACTGCTCAAA
CTATTCCACAAAATAGATTCTGACCGTACTCTACCCAATTCATTCTATGA
AGTCACAATTACTCTGATACTTAAACCACACAAAGACCCAACAAAGAAAG
AGAACTATAGACCAATTTCCCTTATGAATATCGATGCAAAATTACTCAAT
AATATTCTGGCAAATGGAATCCAAGAACACATCAAAATGATCATCCATCA
TGGTCAAGTAGGCTTCTTCCCATGGTATGCAGGGATGGTTCAATATACAG
AAATCCATCAACATAATCCACTATATAAACAAACTCAAAGAAAAAACAAC
ATATGATCTTCTCACCCACCACGCTGAGAAAGCATTTGACAAAATCCAGT
ACCCGCTCATGATAAAAGTCTTGGAAAAGATCTGGAATTCAAGGCCCATG
CCTAAACACAGTAAAGAACTTTAGAGCAAACCAGTAGCCAATACCACACT
AAGTGGAGAGAATCTTGATGCAACCCCACCTACATCATGGAATTACGCAC
GCGCCCGCTTATTCTCCTCCTACCTAATCAACCAACCGTTCGAATTTCTT
CCCCCATTCCTTATCCCCATCTCTGCATATTTCTTGTCTTCTCCTTTCCG
ATCGCACTAATCCTAACACCCCTATTCGGCAAATTTTATTATTACTACTT
TTCTCCTTACCCCT
CCGATGCAGTGNGAGGCCTGGNNGGCGCCTGTTTTCAAAAAGGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAGTATAAGAAGATCCTG
TTTCAAAACATCAATCTAACAACATGAAAAATGAAAAAAAAAAAAACAAA
AACAAAAACAGAAAGAGAGAAGGAAGAAAGCCCTGGAATGGAAGGAGGGA
GAGAAGAAGGAAGAAAAGAAAAAGAAAATATTCTACATGAAGAATTGTTG
AAGGCTGAGTGTGGTAGCACACACCTTCAATCCCAGCTCTCAGAAGGAAG
AGGCAGGCAGATTTCTGTAGTTTTAATTCAGTCTGGTCAACAGAGTGAGT
TCCAAGACAGTCAGGGCTATGTAGATAGAGCCCTTCTCAATAAGCAAGCA
AGCAAACAAAGAGATGAACAACCAACCTAACCAAAACAACAACGACAAGA
ACAAAAAAGATTTGTTGATTTCCATGGGGGAGAAACAGAAAGAGCATTGT
AATAGGCCTGGCAGAAATGAAGATATTCTAAAGAGACGCGCGTGTCTCTC
AATCCATGCGACTGTTGAAATAATGGATCCTCAAAGAAATAGGGATCATC
CCAGGAATTTCAAGCTGGGAGAAACAAAGAGACCCAGGTAGCATGGGAAC
CCATCTCCCATAAGATTATGTCTCACGGTTCTAATCATGTGTCTGAAAAC
CTTATTAGGATGAGACTGAATCCTAAATGGGCGATTCTTAAGCAACACTG
CACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_j10.g1 MSMg01no450_j10.g1 CHROMAT_FILE:
MSMg01no450_j10.g1 PHD_FILE: MSMg01no450_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:34 2005
         (281 letters)



>mm_chr11_58172644_58173324
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctggtcaacagagtgagttccaagacagtcagggctatgtagatagagcccttctcaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctggtcaacagagtgagtttcaagacagtcagggctatgtagatagagcccttctcaa 260

                                                                       
Query: 61  taagcaagcaagcaaacaaagagatgaacaaccaacctaaccaaaacaacaacgacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagcaagcaagcaaacaaagagatgaacaaccaacctaaccaaaacaacaacgacaaga 320

                                                                       
Query: 121 acaaaaaagatttgttgatttccatgggggagaaacagaaagagcattgtaataggcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaaaagatttgttgatttccatgggggagaaacagaaagagcattgtaataggcctg 380

                                                                       
Query: 181 gcagaaatgaagatattctaaagagacgcgcgtgtctctcaatccatgcgactgttgaaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gcagaaatgaagatattctaaagagacgcgtgtgtctctcaatccatgcgactgttgaaa 440

                                                    
Query: 241 taatggatcctcaaagaaatagggatcatcccaggaatttc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatggatcctcaaagaaatagggatcatcccaggaatttc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)