Query= MSMg01no450_l24.b1 MSMg01no450_l24.b1 CHROMAT_FILE:
MSMg01no450_l24.b1 PHD_FILE: MSMg01no450_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:47 2005
(527 letters)
>mm_chr11_19448294_19449220
Length = 927
Score = 959 bits (496), Expect = 0.0
Identities = 519/532 (97%), Gaps = 10/532 (1%)
Strand = Plus / Plus
Query: 1 cactcctccagaaaatgtaaatgctggctacaaaataagcagaggataagaaagagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcctccagaaaatgtaaatgctggctacaaaataagcagaggataagaaagagagaa 260
Query: 61 aagaaaaggacaaagaaatcaagaacagagcagcacggaaacccagaagacacagctgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaaggacaaagaaatcaagaacagagcagcacggaaacccagaagacacagctgac 320
Query: 121 ggaccactgagaagccacaaccttgcctctcacctccaggtcccacagacacagccaaat 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggaccactgagaagccacaaccttgcctctcacctccaggtcccactgacacagccaaat 380
Query: 181 gtgtgtgggagcatcagaaaggtgcccaggaaagtggggtcctttgcctttccaccatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgggagcatcagaaaggtgcccaggaaagtggggtcctttgcctttccaccatca 440
Query: 241 cgaacaagattttt-----gaaaagtagtctatctgctcttcacccccctcttctctcct 295
||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cgaacaaga-----aaagagaaaagtagtctatctgctcttcacccctctcttctctcct 495
Query: 296 tctgcctgatactcacactgactcccaaagtatagttactctgacattaaagcttatggt 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 496 tctgcctgatactcacactgactcccaaagtatagttactctgacattaaagtttatggt 555
Query: 356 aattaccaggagtcagaagaaagcacaagaaagagataacaaagtaatactgtgagtgat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aattaccaggagtcagaagaaagcacaagaaagagataacaaagtaatactgtgagtgat 615
Query: 416 ggcttctgtcctattaatataaatgaatacaaaatactttttaaaaaatgcattaggcag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggcttctgtcctattaatataaatgaatacaaaatactttttaaaaaatgcattaggcag 675
Query: 476 atattggcttatgatgaggtcaatatcacgatttatttaactctggggacaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atattggcttatgatgaggtcaatatcacgatttatttaactctggggacaa 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_l24.g1 MSMg01no450_l24.g1 CHROMAT_FILE:
MSMg01no450_l24.g1 PHD_FILE: MSMg01no450_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:47 2005
(567 letters)
>mm_chr11_19582000_19582969
Length = 970
Score = 888 bits (459), Expect = 0.0
Identities = 490/509 (96%), Gaps = 15/509 (2%)
Strand = Plus / Minus
Query: 62 gggtggtgatagtacatgtctttagtcctagcactcgggagtcagaggcagacagattct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 gggtggtgatagtacatgtctttagtcctagcactcgggagtcagaggcagacagattct 907
Query: 122 gagttcaagaccagcctagtctacaaagcaagttgctagagagtcaggactatacagaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gagttcaagaccagcctagtctacaaagcaagttgctagagagtcaggactatacagaga 847
Query: 182 aactgtgtcttgaaaaacacaaacaaaaaaccaagccaaccaaccaaccaaccaaccaac 241
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 846 aactgtgtcttgaaaaacaaaaacaaaaaaccaagccagccaaccaaccaaccaaccaac 787
Query: 242 caaccaaccatttttccaaccaaccaacaccaaaagacaaagcagaattgcaataagtcc 301
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 caa------------ccaaccaaccaacaccaaaagacaaagcagaattgcaataagtcc 739
Query: 302 ttgacttagaagatcaaatggatgcatgcttgtacaccacacacaggcttctgctgaagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgacttagaagatcaaatggatgcatgcttgtacaccacacacaggcttctgctgaagt 679
Query: 362 tagctctcaataggaatcatttaggattgggaataaggatgcaaatgtttaaggaactct 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 678 tagctctcaataggaatcatttaggactgggaataaggatgcaaatgtttaaggaactct 619
Query: 422 cttttgaacacagatttattgcgatacaactcccttatttacagagtacaatctactttt 481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttttgaacacagatttattgcgctacaactcccttatttacagagtacaatctactttt 559
Query: 482 ttttttt---aacaatcaaacagctctataaatgatcaaaactgattttagggcactatg 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttttttaaaacaatcaaacagctctataaatgatcaaaactgattttagggcactatg 499
Query: 539 gtggtttgaagatgcttggctcactatta 567
|||||||||||||||||||||||||||||
Sbjct: 498 gtggtttgaagatgcttggctcactatta 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 970
Length adjustment: 10
Effective length of query: 557
Effective length of database: 960
Effective search space: 534720
Effective search space used: 534720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
