BAC Information

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BAC

Clone NameMSMg01-450O03
Chromosome11 (Build37)
Map Location 106,094,016 - 106,245,851
singlet/doubletdoublet
Overlap geneDdx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Downstream geneErn1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450O03.T7 (MSMg01no450_o03.b1)MSMg01-450O03.TJ (MSMg01no450_o03.g1)
ACCAG538503AG538504
length762769
length of high quality
(start - end)
459 (79 - 537)325 (81 - 405)
definitionCHROMAT_FILE: MSMg01no450_o03.b1 PHD_FILE: MSMg01no450_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:57 2005CHROMAT_FILE: MSMg01no450_o03.g1 PHD_FILE: MSMg01no450_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,094,016 - 106,094,470)(106,245,527 - 106,245,851)
sequence
GGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTATTATCCTAGAAAGAATGCCTTTGTTTTTATAATATTT
GTAAAAAGTTATCTTACATTAAATCAAACTTACAGGATTGACTCTTGAAT
TCTAGACTAACTTTGAATAATTGGACCTGCAGATTGACTATCCACCATTT
GAAAAAAATTTTTACAATGAACATGAGGAGATAACCAACCTCACTCCACA
GCAGTTGATAGACCTGCGACATAAGCTCAACCTTCGGGTAAGAACCATTA
CGCAAGAATCCTTACATCAGTGTTTGTACAAGTTTAGAATTACTGCTCAT
CCAGATAGTAAGCCTAGATTTATTTACTAGGGAGAATAATAATTACAGCC
CTAGGGTTTGTGTGTCTTGGATTTGATTGATTTAGCCCTAAAGATGCTAT
TTCAGAAAGATTATTTTGGTTTTAACTTTTCATCTTTTAAAAATACTGTG
TGTGCACATATGTGTGTGGATATTGGGGGGTTGTTTTTNNANGNCNCTTN
TGTATTTTGGTGTCTTCTCCNCCGTTTTTCCCCTTGTCCCTTCTCCCCCT
GCCCCGCTCGCTCCTCTTCCCCTCGTCCGTGGACGCCCTTCATCCTTCCT
CCATATTTTTTTTTGTCTTTACCGCCCCTTTTTCTTGTTCCACTCTTCCT
TCCTTATACCAGGTTCCCCTATCTCTGCTCTCAATTTTTTCTCCCCCTCC
CTCCCTTCGCCG
GATGACGATGCTGGGTGTAGGCGCTGGGNGCGCCTGTTTCACAXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGTAAGCAGGTCATATT
TAGGGAGCGCATTGACAGTGACCAGCCTGACGTAGGTATAGTCACCTGCT
CCAAGACAACACTCTCATCCATGACAGGCCACATGTACGTGCAATAGAGG
TCCCAGAAGATTACACTGGAGCTACAAAAGTCATACCACATAGAGGCCTT
ATAGCCATCACAGCCCGGTGACAACACTGAATGCATCACTCCCAGATTCT
CCTGGTGGTGTTAGTGTGCTACTGTTTTGTAGCTGTGTTCAAGTATAACA
CGTCTAACTATGTACAGGACGGCAGTGTCCTGTACCGTCTAGGTTTGTGT
GGACACACTGTGGTGCTCACACCACCTGATGACTTAGTTCTCTGAACGTG
AACTGTACTGCTAGTTTTATGTCAGTGCTTACCACTTATCATGCTGCTAA
AAACTCTTTCACCCTATCCCTGTTTCTCTTCGTTCGTTTTTACGCTGTAC
GTCTTCGTATCCACTTTTTTCTTTACCATCCCTTTTCTATTTGATCCATA
CTTTTTCCCTCCTCGTCCTACTAGTCTGCTTAGTCTTCCTCGCTTCTCTT
GCTCCTTCTTCTTCCTTCCTCCTTTCTTTTCTCCTCCTTCCTCTTTCTTC
TTTTCATCCTCTTTCTTTTTCCCTTTTTCCGTTCCTCTCTCTCTTTTTTC
CTTCTTTTCCTTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_o03.b1 MSMg01no450_o03.b1 CHROMAT_FILE:
MSMg01no450_o03.b1 PHD_FILE: MSMg01no450_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:57 2005
         (459 letters)



>mm_chr11_106093816_106094674
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctttgtttttataatatttgtaaaaagttatcttacattaaatcaaacttacaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctttgtttttataatatttgtaaaaagttatcttacattaaatcaaacttacaggat 260

                                                                       
Query: 61  tgactcttgaattctagactaactttgaataattggacctgcagattgactatccaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactcttgaattctagactaactttgaataattggacctgcagattgactatccaccat 320

                                                                       
Query: 121 ttgaaaaaaatttttacaatgaacatgaggagataaccaacctcactccacagcagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaaaaaatttttacaatgaacatgaggagataaccaacctcactccacagcagttga 380

                                                                       
Query: 181 tagacctgcgacataagctcaaccttcgggtaagaaccattacgcaagaatccttacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacctgcgacataagctcaaccttcgggtaagaaccattacgcaagaatccttacatc 440

                                                                       
Query: 241 agtgtttgtacaagtttagaattactgctcatccagatagtaagcctagatttatttact 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtttgtacaagtttagaattaccgctcatccagatagtaagcctagatttatttact 500

                                                                       
Query: 301 agggagaataataattacagccctagggtttgtgtgtcttggatttgattgatttagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggagaataataattacagccctagggtttgtgtgtcttggatttgattgatttagccc 560

                                                                       
Query: 361 taaagatgctatttcagaaagattattttggttttaacttttcatcttttaaaaatactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagatgctatttcagaaagattattttggttttaacttttcatcttttaaaaatactg 620

                                              
Query: 421 tgtgtgcacatatgtgtgtggatattggggggttg 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtgcacatatgtgtgtggatattggggggttg 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_o03.g1 MSMg01no450_o03.g1 CHROMAT_FILE:
MSMg01no450_o03.g1 PHD_FILE: MSMg01no450_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:57 2005
         (325 letters)



>mm_chr11_106245327_106246051
          Length = 725

 Score =  582 bits (301), Expect = e-171
 Identities = 319/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagtaagcaggtcatatttagggagcgcattgacagtgaccagcctgacgtaggtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aggagtaagcaggtcatatttagggagcgcattgacagtgaccagcctgacgtaggtata 466

                                                                       
Query: 61  gtcacctgctccaagacaacactctcatccatgacaggccacatgtacgtgcaatagagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 465 gtcacctgctccaagacaacactctcatccatgacaggccacatgtacgtacaatagagg 406

                                                                       
Query: 121 tcccagaagattacactggagctacaaaagtcataccacatagaggccttatagccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tcccagaagattacactggagctacaaaagtcataccacatagaggccttatagccatca 346

                                                                       
Query: 181 cagcccggtgacaacactgaatgcatcactcccagattctcctggtggtgttagtgtgct 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagcccggtgacaacattgaatgcatcactcccagattctcctggtggtgttagtgtgct 286

                                                                       
Query: 241 actgttttgtagctgtgttcaagtataacacgtctaactatgtacaggacggcagtgtcc 300
           |||||  || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 285 actgtggtgcagctgtgttcaagtataacacgtctaactatgtacaggacggtagtgtcc 226

                                    
Query: 301 tgtaccgtctaggtttgtgtggaca 325
           |||||||||||||||||||||||||
Sbjct: 225 tgtaccgtctaggtttgtgtggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)