BAC Information

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BAC

Clone NameMSMg01-451I04
Chromosome11 (Build37)
Map Location 30,644,908 - 30,645,575
singlet/doubletsinglet
Overlap genenone
Upstream geneC230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470
Downstream geneLOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451I04.T7 (MSMg01no451_i04.b1)MSMg01-451I04.TJ (MSMg01no451_i04.g1)
ACCAG538982AG538983
length736731
length of high quality
(start - end)
673 (52 - 724)45 (83 - 127)
definitionCHROMAT_FILE: MSMg01no451_i04.b1 PHD_FILE: MSMg01no451_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:47 2005CHROMAT_FILE: MSMg01no451_i04.g1 PHD_FILE: MSMg01no451_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAAGATTAGCAAACCTCATAAAGGACATTGAGAACAT
ACAGAACAAAACAGGATATGTGGTCAGCATATGTGGGCCAGGTCACTTCT
CTGTGTCAATGACTGGCAGGCATGTTACAGCAACAATATGAAATAGCTGG
CAGGCATGAACAAAATGGCTACAGCTATTCTGGTGGGTCAGACAATAACA
TCCCATCAATCACTAAGAAAACATCTGATAGGTTTGCAGCAGGAGGCAAT
TTGTAAATCGTGGTTCCCTCTCCTTTCAGATGACTCTAGCTTATGTCAAG
TTGACATACTAGCTAGCACAAAATCTCACTTTGGTGTTTAAGATTCTGTT
GAGTTATGAACAACCTAATAAAATCGTTGTCTATGCTAAATAAATGCTCT
GAATAAACTGAGATTGGAACATGTGATCTGGCTATTTATATGCCATTTTC
AAAAAAGCAAATTACCGTGCTGGAGAGAGAGCTTAGCGATTAAGAGCACT
GTCTCTTCTTCCTGAGGCCCTGAGTTCAATTCTCAGCAACTACATTATGG
CTCACAACCATCTGTCATAGGATCTAATACCCTCCTCTGGTGTGTCTGAG
GAGAACCACACATACTCATTAACAAAAAATAAATCTAAAAAAAAAAAAAA
TACCAGTGACATTTTTCAAAACAATCTAGTCTAGCN
GGAAGGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGTTTATATGGAGCG
TGAAACCCACCCTTCCCTAATACACATACACACACACACACACACACATT
TTTACAATCATGAACGGGGGTGGGGAGAGGGAGAAAGAGAGGGATCACTT
GATGTCATTGAAGTTACAGCTTTGATAATCATTTGGTCCTTTTGGGTTTT
GGCCTCATTTTGAGACTGTCTAGGTGTTGTGATTTTTTGGCATAGATGTT
GTTAGCAATGTATATTTTGTTTGTCTTGGTTTTTAGAGATGTGACTTTTT
TTTGAGATTTTCTTTTACAAGCAGATTTTGAGTATTTCGAATTGTACACA
GATGGTTGACTTTTTATTTTGTCAACAACGCAATCTGTCATGGTTTCACT
GCATATGCTTCATTGATTAAGTATTCATTGTGTACTTTTGGCTCATTAAT
ATCACGACTCCCTATGTATGTTACATTTGTGATCGGATATTCTTGTGGAA
TTTACTGAATTTTCTACACTGAGGGATACTGTTTGAACACTATTTTGTAG
CCAGTTCTATGATGAACATTGTTTAGCGCTGGGAGTGCAGTTCCCTCTGA
TTACATGTAAACTAAATTGATTGTGAGTTTTTGATATCCATTCTTACATG
TAGGAGGTGAGATAATGATGAGGCTACTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_i04.b1 MSMg01no451_i04.b1 CHROMAT_FILE:
MSMg01no451_i04.b1 PHD_FILE: MSMg01no451_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:47 2005
         (673 letters)



>mm_chr11_30644705_30645777
          Length = 1073

 Score = 1284 bits (664), Expect = 0.0
 Identities = 668/670 (99%), Gaps = 2/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttaagattagcaaacctcataaaggacattgagaacatacagaacaaaacag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttaagattagcaaacctcataaaggacattgagaacatacagaacaaaacag 263

                                                                       
Query: 64  gatatgtggtcagcatatgtgggccaggtcacttctctgtgtcaatgactggcaggcatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatatgtggtcagcatatgtgggccaggtcacttctctgtgtcaatgactggcaggcatg 323

                                                                       
Query: 124 ttacagcaacaatatgaaatagctggcaggcatgaacaaaatggctacagctattctggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacagcaacaatatgaaatagctggcaggcatgaacaaaatggctacagctattctggt 383

                                                                       
Query: 184 gggtcagacaataacatcccatcaatcactaagaaaacatctgataggtttgcagcagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggtcagacaataacatcccatcaatcactaagaaaacatctgataggtttgcagcagga 443

                                                                       
Query: 244 ggcaatttgtaaatcgtggttccctctcctttcagatgactctagcttatgtcaagttga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcaatttgtaaatcgtggttccctctcctttcagatgactctagcttatgtcaagttga 503

                                                                       
Query: 304 catactagctagcacaaaatctcactttggtgtttaagattctgttgagttatgaacaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catactagctagcacaaaatctcactttggtgtttaagattctgttgagttatgaacaac 563

                                                                       
Query: 364 ctaataaaatcgttgtctatgctaaataaatgctctgaataaactgagattggaacatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaataaaatcgttgtctatgctaaataaatgctctgaataaactgagattggaacatgt 623

                                                                       
Query: 424 gatctggctatttatatgccattttcaaaaaagcaaattaccgtgctggagagagagctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatctggctatttatatgccattttcaaaaaagcaaattaccgtgctggagagagagctt 683

                                                                       
Query: 484 agcgattaagagcactgtctcttcttcctgaggccctgagttcaattctcagcaactaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcgattaagagcactgtctcttcttcctgaggccctgagttcaattctcagcaactaca 743

                                                                       
Query: 544 ttatggctcacaaccatctgtcataggatctaataccctcctctggtgtgtctgaggaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttatggctcacaaccatctgtcataggatctaataccctcctctggtgtgtctgaggaga 803

                                                                       
Query: 604 accacacatactcattaacaaaaaataaatctaaaaaaaaaaaaaataccagtgacattt 663
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 804 accacacatactcattaacaaaaaataaatctaaaaaaaaaaaa--taccagtgacattt 861

                     
Query: 664 ttcaaaacaa 673
           ||||||||||
Sbjct: 862 ttcaaaacaa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)