BAC Information

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BAC

Clone NameMSMg01-451O03
Chromosome11 (Build37)
Map Location 29,918,169 - 29,918,471
singlet/doubletsinglet
Overlap geneC230094A16Rik
Upstream genePnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, 4931440F15Rik
Downstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O03.T7 (MSMg01no451_o03.b1)MSMg01-451O03.TJ (MSMg01no451_o03.g1)
ACCAG539268AG539269
length716729
length of high quality
(start - end)
442 (57 - 498)441 (86 - 526)
definitionCHROMAT_FILE: MSMg01no451_o03.b1 PHD_FILE: MSMg01no451_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:17 2005CHROMAT_FILE: MSMg01no451_o03.g1 PHD_FILE: MSMg01no451_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGTTAGAAGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTGTTCTCTAGGCTGAGGTTCTCGGCTTGAGCCCA
AATTGTTTTGGTTAAAGTAACTACTGCAGCTCCCATGTACCTGGTTCATC
AGATAAGACATTAGATTGCATGATTGATAGTGGTAGGCTTCTCACACTGG
ACTTGAGAGTAGACCAAGAGTAGGGCCTGGTATTGCATCACACAGTCATT
AGATAGCCATTTTGTTCTAGTGCTTCTCAGTGGAGGGCCTGAGCTATGTT
GAGGGGTGCTGTGAGTATAAGATCTTGACCCAAGGCTAACTTGTTTATTT
TTTTCTATTAAACTAGCAATAGCCACCACAGCTCTTACTCAGGTGATTCC
ACTGGGGTATGTGAATGCTGTTAGGATAGACAAAACAGGAGGGTAATAGG
CTGCATTCCATCCTCTCCACCATTTGGGGTGCAGGAGTGACAGGACATAT
CCTATGACAGGAGCCCAAGCATGGGTGAGAAACATCACAGGCTGAGGCTG
ATGATGCAGTGCTACTGACAGACAAACCTCAATTGGGTCTTCCATCTGCA
TAAAAATCGGTTTCTGGTGGTTACAGGCGAGCTAGGAGTTGGCTCAAATG
ATAAATAAATACCATCACTAGGTATTGTTGTATCTGGATGTATTTTTGCC
ACATTTAGTACCGACG
TTTTTTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAC
TGAATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACC
ACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTAC
CGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCA
ACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGA
TACAGAAAATGTGGTACATCTACACAATGGAGTATTACTCATCTATTACA
AAGAATGAATTTATTATATTCCTAGCCTAATGGATGGATTTGGAGGGTAT
CATCCTGAGTGAGGTAACACATTCTCAAAGAACACTCACACAATATGTAC
TCACTGATAACGGGATATTAGCCCCAAACCTAGGATACCCATGAAATTAG
ATATAATTTGCTAAACTCTTGATATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o03.b1 MSMg01no451_o03.b1 CHROMAT_FILE:
MSMg01no451_o03.b1 PHD_FILE: MSMg01no451_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:17 2005
         (442 letters)



>mm_chr11_29917630_29918471
          Length = 842

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 139 cactggacttgagagtagaccaagagtagggcctggtattgcatcacacagtcattagat 198
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cactggacttgagagtagatcaagagtagggcctggtattgcatcacacagtcattagat 783

                                                                       
Query: 199 agccattttgttctagtgcttctcagtggagggcctgagctatgttgaggggtgctgtga 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agccattttgttctagtgcttctcagtggagggcctgagctatgttgaggggtgctgtga 723

                                                                       
Query: 259 gtataagatcttgacccaaggctaacttgtttatttttttctattaaactagcaatagcc 318
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 722 gtataagatcttgacccaaggctaacttgtctatttttttctattaaactagcaatagcc 663

                                                                       
Query: 319 accacagctcttactcaggtgattccactggggtatgtgaatgctgttaggatagacaaa 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 accacagctcttactcaggtgattccactggggtatgtgaatgctgttaggatagacaaa 603

                                                                       
Query: 379 acaggagggtaataggctgcattccatcctctccaccatttggggtgcaggagtgacagg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acaggagggtaataggctgcattccatcctctccaccatttggggtgcaggagtgacagg 543

              
Query: 439 aca 441
           |||
Sbjct: 542 aca 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)