Query= MSMg01no452_g08.b1 MSMg01no452_g08.b1 CHROMAT_FILE:
MSMg01no452_g08.b1 PHD_FILE: MSMg01no452_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:56 2005
(374 letters)
>mm_chr11_107422937_107423710
Length = 774
Score = 542 bits (280), Expect = e-158
Identities = 298/304 (98%)
Strand = Plus / Minus
Query: 4 ggaattctgcgtttcctctcctggcctgcacccaggttcctcccctctgtagcgcctcta 63
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggaattctgcatgtcttctcctggcctgcacccaggttcctcccctctgtagcgcctcta 245
Query: 64 ctcgggtgctctctcatgcgcacttaatacatctaagaccagggctgcagtgatagccca 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctcgggtgctctctcacgcgcacttaatacatctaagaccagggctgcagtgatagccca 185
Query: 124 gtggttaagagaacttgcagaagacctgagttcagtccctagcaccctcatagtggctca 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 184 gtggttaagagaacttgcagaagacctgagttcagtccctagcaccctcataatggctca 125
Query: 184 aaaccttctatagctccagttccgggggacctgatgccctcttctgacctctgtgggcac 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 124 aaaccttctatagctccagttccgggggacctgataccctcttctgacctctgtgggcac 65
Query: 244 caggcacacacatggtacacagatataaatgcaatgaaaacactagacacataaagtaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 caggcacacacatggtacacagatataaatgcaatgaaaacactagacacataaagtaac 5
Query: 304 taaa 307
||||
Sbjct: 4 taaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_g08.g1 MSMg01no452_g08.g1 CHROMAT_FILE:
MSMg01no452_g08.g1 PHD_FILE: MSMg01no452_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:56 2005
(564 letters)
>mm_chr11_107228494_107229456
Length = 963
Score = 1025 bits (530), Expect = 0.0
Identities = 554/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Plus
Query: 1 caggaaaagagaaaaggccattattgtgagtttgaggccagcctggtctacatagcgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caggaaaagagaaaaggccattattgtgagtttgaggccagcctggtctacatagcgagg 264
Query: 61 cacgtcaaagaaggcaagtaagcaagcaagaaagaaagaaaggagggaggaaggagaaga 120
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 265 cacgtcaaagaaggcaagtaagcaagc----aagaaagaaaggagagaggaaggagaaga 320
Query: 121 ttatctaaaatattatctaagataacaaaaggagcgaagagaagagctcagaatacttgt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ttatctaaaatattatctaagataacaaaaggagcaaagagaagagctcagaatacttgt 380
Query: 181 ttagaattcttagctttgggacctaagagatggcgcagactactgtatgaaagcacacac 240
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttagaattcttagctttgggacataagagatggctcagactactgtatgaaagcacacac 440
Query: 241 cactactctgcagaaagtctgagtcccattcctggcacccacgcccagtggctcacaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactactctgcagaaagtctgagtcccattcctggcacccacgcccagtggctcacaact 500
Query: 301 tgcacttccagtgcttggggatccaacatctctggcctccacggacacatatacataatt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcgcttccagtgcttggggatccaacatctctggcctccacggacacatatacataatt 560
Query: 361 aaaaatcaaaaccaaaaacaactgacttttaggacaactgaagggtatgagacaagcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaatcaaaaccaaaaacaactgacttttaggacaactgaagggtatgagacaagcaaa 620
Query: 421 ttcaatctgtagctttcttactgattagtgggaagccaatgggaagacatccattgggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaatctgtagctttcttactgattagtgggaagccaatgggaagacatccattgggaa 680
Query: 481 acagtatatgatccggtaatgttgattaagaggctcgccgatggggggacacacagacat 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 acagtatatgatccggtaatgttgattaagaggctcgccgatggggg-acacacagacat 739
Query: 541 ggctgccagcggcaggagggaggc 564
||||||||||||||||||||||||
Sbjct: 740 ggctgccagcggcaggagggaggc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
