BAC Information

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BAC

Clone NameMSMg01-452H01
Chromosome11 (Build37)
Map Location 51,692,416 - 51,693,024
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15
Downstream geneD11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H01.T7 (MSMg01no452_h01.b1)MSMg01-452H01.TJ (MSMg01no452_h01.g1)
ACCAG539691AG539692
length744754
length of high quality
(start - end)
624 (49 - 672)527 (81 - 607)
definitionCHROMAT_FILE: MSMg01no452_h01.b1 PHD_FILE: MSMg01no452_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:59 2005CHROMAT_FILE: MSMg01no452_h01.g1 PHD_FILE: MSMg01no452_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGCCTTACGTGCTGGGGTTACAGGGGTGTATCACCATGCC
TGTTTAATGGACTGAGAGGATTGAACCCAAGCAGGCAGTCTACCAACTGA
TCTACACCCCCAGTCTCCCAAATTAAAACATTTTAAAAAAGATTTATCCT
ATATGTGTGTGTGTGTATGATAGTGACATATTGTATAATCTCACACACAC
ACACATATATGTATATGTATATATATATATATATATATACTGTCATTGTC
TTCAGACATACCAGAAGAGGGTAACGGATTACAGATGGTTGTGAGCTGCC
ATGTAGTTGCTAGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCAGGGT
TCTTAACTGCTGAGTCATCTCTCCAGCATCTCCCCCACCCCCCTTAAATA
CTTATTTTTATTCCTTGTGTGTGTGATGTGTTTGCATGTGCAGGTATGTG
TGTGTGCGTGAATTACACAGGGCTATGGCATGTGCTCAAGTGCATGTATG
TGTGTATGTTTGTCAAAGGACAATCATGGGTGGCAGTCCTCCTGGGCTAT
CTGGTCTACCAACTTCCAGGGATTCTCCTGTCTCTGTGTCTCTGCCTCTG
TTATTACAATTCCTTCCCTTGCGAAGATGAAAACACGGTCTTCCCTTCCA
CTTAATGTTCCAGAGACAGACAGCCAAAGTTCGCTACCTATGGG
CCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACACCCAGACAGAAAG
ATCCTGCCACACACACACACACACACACACACACACACACACCAAAATAA
AAGCAAAACAAAAAGCCCACCAAGGAATGACTCTCTTACCTCTTGTCATT
TTTACAAAAAGGATTTAAAATGTACTCTTAGCAATTTTAAATAACACAAT
AGTCAGTAACTGTAGTTACAACACTGCAAAAATAATCTTTTGAGCCAGGT
GCTGGTGGTATATGTTGCAGGATATTTGATCACACTTGGAGGAAGCACCC
AAGTTTGAAAGTGCTGTCTAATTGAGTGGCAGCCAAAGTCAGGAACCAGA
GAAAGCTTTGACAGAGCAGGATACGCCCAACTCTCAGGAGAACAGAGAAT
AAAGAGGCTTCTGAAGAGAGATGAGAAAGCAGTTTTATCGGGGAAGTTTC
ACAGAGATGGACTGGACAGAGAACAGGCTAGACACAGGTGAGACAGAACA
AGCTAGGGAATGAGAAGGAGCTAGAAGATTAGAACAGATTACCAAAGTTA
ATATGAGGCCAAGCAGAGCAAAAAGTCAGAGCCAGAGAAAGAAGCCAGAC
CGAGTCAGTCAGCTTGGAGAGGAATTTGAGCCAGAAAAGCTGAGTTGAAC
CAGCCAGAGCTCAGATAGAACTTGTAAGGGTGAGCAACAGCAAGTCTCAT
AAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h01.b1 MSMg01no452_h01.b1 CHROMAT_FILE:
MSMg01no452_h01.b1 PHD_FILE: MSMg01no452_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:59 2005
         (624 letters)



>mm_chr11_51692212_51693237
          Length = 1026

 Score = 1096 bits (567), Expect = 0.0
 Identities = 602/621 (96%), Gaps = 14/621 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgccttacgtgctggggttacaggggtgtatcaccatgcctgtttaatggac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgccttaagtgctggggttacaggggtgtatcaccatgcctgtttaatggac 264

                                                                       
Query: 65  tgagaggattgaacccaagcaggcagtctaccaactgatctacacccccagtctcccaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagaggattgaacccaagcaggcagtctaccaactgatctacacccccagtctcccaaa 324

                                                                       
Query: 125 ttaaaacattttaaaaaagatttatcctata--tgtgtgtgtgtgtatgatagtgacata 182
           ||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 325 ttaaaacattaaaaaaaagatttatcctatatgtgtgtgtgtgtgtatgatagtgacata 384

                                                                       
Query: 183 ttgtataatctcacacacacacacatatatgtatatgtatatatatatatatatatatac 242
           |||||||||||  ||||||||||||||||||          |||||||||||||||||||
Sbjct: 385 ttgtataatct--cacacacacacatatatg----------tatatatatatatatatac 432

                                                                       
Query: 243 tgtcattgtcttcagacataccagaagagggtaacggattacagatggttgtgagctgcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtcattgtcttcagacataccagaagagggtaacggattacagatggttgtgagctgcc 492

                                                                       
Query: 303 atgtagttgctaggaattgaactcagaacctctggaagagcagtcagggttcttaactgc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgtagttgctaggaattgaactcagaacctctggaagagcagtcagggttcttaactgc 552

                                                                       
Query: 363 tgagtcatctctccagcatctcccccaccccccttaaatacttatttttattccttgtgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgagtcatctctccagcatctcccccaccccccttaaatacttatttttattccttgtgt 612

                                                                       
Query: 423 gtgtgatgtgtttgcatgtgcaggtatgtgtgtgtgcgtgaattacacagggctatggca 482
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 613 gtgtgatgtgtttgcatgtgcaggtatgtgtgtgtgcgcgaattacacagggctatggca 672

                                                                       
Query: 483 tgtgctcaagtgcatgtatgtgtgtatgtttgtcaaaggacaatcatgggtggcagtcct 542
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgtgctcaagtacatgtatgtgtgtatgtttgtcaaaggacaatcatgggtggcagtcct 732

                                                                       
Query: 543 cctgggctatctggtctaccaacttccagggattctcctgtctctgtgtctctgcctctg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cctgggctatctggtctaccaacttccagggattctcctgtctctgtgtctctgcctctg 792

                                
Query: 603 ttattacaattccttcccttg 623
           |||||||||||||||||||||
Sbjct: 793 ttattacaattccttcccttg 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space:   623824
Effective search space used:   623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)