Query= MSMg01no452_l15.b1 MSMg01no452_l15.b1 CHROMAT_FILE:
MSMg01no452_l15.b1 PHD_FILE: MSMg01no452_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
(694 letters)
>mm_chr11_63419482_63420575
Length = 1094
Score = 824 bits (426), Expect = 0.0
Identities = 435/438 (99%)
Strand = Plus / Minus
Query: 257 ttgaggtttatagcaggcaccatttacaattgaatctttacttcctgatttgcccagttg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 ttgaggtttatagcaggcaccatttacaattgaatctttacttcctgatttgcccagttg 1035
Query: 317 tgagcaagctcctgtggcggaggttaggagccactcttactgccatgccttctccaagat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tgagcaagctcctgtggcggaggttaggagccactcttactgccatgccttctccaagat 975
Query: 377 ggtggactgggtcaagatacctctggtagggtgtttccatcagggagtttgccacagcaa 436
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 974 ggtggactgggtcaagatacctctcgtagggtgtttccatcagggagtttgccacagcaa 915
Query: 437 tgaaaaaagtaagtaatacactctggatcttacgcttctgtaaggatgtgactcttgttg 496
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tgaaaaaactaagtaatacactctggatcttacgcttctgtaaggatgtgactcttgttg 855
Query: 497 tgtctactcatacatcaaagatcacagcagtagtcacatctctacctgtgatgccaccag 556
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgtctactcatacatcaaaggtcacagcagtagtcacatctctacctgtgatgccaccag 795
Query: 557 atgtctggaggaaagaaaaggatctagtattttcaatattccagtgacttccgctgggac 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atgtctggaggaaagaaaaggatctagtattttcaatattccagtgacttccgctgggac 735
Query: 617 attccaagggttgaggccagaatggtataattgacttttagattaaagtaccctgccagc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 attccaagggttgaggccagaatggtataattgacttttagattaaagtaccctgccagc 675
Query: 677 tccaaagtttcacttcca 694
||||||||||||||||||
Sbjct: 674 tccaaagtttcacttcca 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_l15.g1 MSMg01no452_l15.g1 CHROMAT_FILE:
MSMg01no452_l15.g1 PHD_FILE: MSMg01no452_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
(493 letters)
>mm_chr11_63327233_63328122
Length = 890
Score = 851 bits (440), Expect = 0.0
Identities = 477/494 (96%), Gaps = 10/494 (2%)
Strand = Plus / Plus
Query: 1 actgagaagagaaaaggcaaaaaacatgccagtgtagcttttttcataactgattaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagaagagaaaaggcaaaaaacatgccagtgtagcttttttcataactgattaaaaa 260
Query: 61 aaaaaaaaagggatcagtcaattcaaaacacaacagaagagataaaggcatcatatgtta 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaa---ggatcagtcaattcaaaacacaacagaagagataaaggcatcatatgtta 317
Query: 121 ataaaaggaaaaccacatcctaatcataaacacattcatattgaatgttaggaccctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ataaaaggaaaaccacatcctaatcataaacacattcatattgaatgttaggaccctctg 377
Query: 181 atttacaacataatctataagttcattcatattaaaaatatgggtagactagaatatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atttacaacataatctataagttcattcatattaaaaatatgggtagactagaatatcat 437
Query: 241 ggtgttaagtgatacaagccaaccatagaaagacaagaatgcttatcatcataagcagaa 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtgttaagtgatacaaaccaaccatagaaagacaagaatgcttatcatcataagcagaa 497
Query: 301 tctaggtttaaatatgtgcatatgatgtaaaacttaaaagtattttaggttgagaaagga 360
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 tctaggtttaaatatatgcttatgatgtaaaacttaaaagtattttaggttgaggaagga 557
Query: 361 gtatagagaggaggaggaggaggaacatttttatacatttatacacatgtgtgcatatac 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtatagagaggaggagga------acatttttatacatttatacacatgtgtgcatatac 611
Query: 421 acatgtgtcttgaaagctgtagtgaacaatttgggaatgaaaaagagtgtgggagggtaa 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 612 acatgtgtcttgaaagctgtagtgaacaatttgggaatgaagaagagtgtgggaggctaa 671
Query: 481 tatggggg-tgagt 493
|| ||||| |||||
Sbjct: 672 tagggggggtgagt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 890
Length adjustment: 10
Effective length of query: 483
Effective length of database: 880
Effective search space: 425040
Effective search space used: 425040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
