BAC Information

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BAC

Clone NameMSMg01-452M23
Chromosome11 (Build37)
Map Location 60,070,530 - 60,253,120
singlet/doubletdoublet
Overlap geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik
Upstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1
Downstream geneLOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452M23.T7 (MSMg01no452_m23.b1)MSMg01-452M23.TJ (MSMg01no452_m23.g1)
ACCAG539973AG539974
length744753
length of high quality
(start - end)		596 (143 - 738)573 (80 - 652)
definitionCHROMAT_FILE: MSMg01no452_m23.b1 PHD_FILE: MSMg01no452_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:29 2005CHROMAT_FILE: MSMg01no452_m23.g1 PHD_FILE: MSMg01no452_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,252,783 - 60,253,120)(60,070,530 - 60,071,102)
sequence
NAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTGATATCCAAATCTTCAGTACAGGCTACATTGCATATTAG
AAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCAGTTACTTAA
AAGTTACACTCATGTGGGGGTTTGGCAAGGCCTAGGAAATGGGGAGGGGA
GGGGTTTGTGATGTTGCATTATTCATGAGGCCTGCTAAGAGCAGAACCCC
CTGGTGCTAGCTTTCACAAGGTTCAAAGGTATAGCACTAGAGTGTGAAAT
CTTTACCTGTCACTAAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTG
TAAACATCTACCTGGTTTCTGTAAATCCCTTTGTTGTCATTCCTTTGTTT
TGTATCAAGTAACTTCAATGTACTTTGCCTGCTACCCTTTTTATTTTCTG
TACTATATAAGATTGGTGTTCACTTTGTGACATTACATTCAGATTCTACA
CAATCTCGAATGTTGGTCTGTCTGTCACCCGCTGATGCCTTGTCCACCTG
CCTCAGAGACTCGTTCCACACAGACAAAGGGACTCAGAGGGTCTGCAGCA
TAAGGTAGGAAGGTGAACTCTCATGGCCCCCTCATTCATCAGCCCAAGAT
CAAGTGCATGAGAGGCAGTGCCAGGGTGTAACTAAAAAGTCACATTGTCT
GTAAGAGATAACATTAATTTACTGGTAAATTTATGAAGAATATN

NCACAATGCTGNTGGTAGCCTGGCGGCCGCCTGGATACAAAAATAGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACACTGATACAACATAGTCACC
ATATCATACTAGACTGGCCTCAGAGTCCTGTGTGCCCTAGGATGCCTAGC
CGAGCCCTCCTGCAGGCTACGTTAGGGGCCAATGATGGTGTATTCAAGGT
AGGTGGGTCCACAGAGTAGGTAACACACGATCACCACCTGAAGAATCAGG
ACCTTGGTTTGCTGCAGGTGTCAGGAGTGAAGTCTGGGAACCAGAGATAC
TCAGTGCTCCTACTGACTTAGGCCAAGGGTATTCATCTCAGTTTCAGGAG
CAGTCTGATGTTCAGGTCTCTTGCAGTCAGCAGTTTCCTTGTTTGTCTCC
TGTACTTAGCTGGGAGCTCCCTAGAGCAGAAGCCGTATCTCCTACTGTCC
ATGACACTTAGACTGTGCTCAGTGCTGGACCAGAAGAAAGTTTTACCATG
CCTTGCTCTATAGGAACTAAGAGCTTGGAGTGGGGAGTGGGAACTCCAAG
TAGCAGAACCACTGGGCATGTGTATTACCAAAGCGCAGGAGCATCAGAGC
CAAGTTTCCTGGGTGACCAGTGTGTGTATTCAGCAAAGTGGGAGATGCAG
AACTCACGTGTGCAAGACTGCCAGACAGAAACAGCAGCAGCAGTAGCAGG
GGTATCATGAGGCACTCATGCCAGGTAGGTCACCAAGCCAGCATGATTCC
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_m23.b1 MSMg01no452_m23.b1 CHROMAT_FILE:
MSMg01no452_m23.b1 PHD_FILE: MSMg01no452_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:29 2005
         (596 letters)



>mm_chr11_60252125_60253120
          Length = 996

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 257 tttgtatcaagtaacttcaatgtactttgcctgctaccctttttattttctgtactatat 316
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 996 tttgtatcaagtaacttcaatgtactttgcctgctaccctttgtattttctgtactatat 937

                                                                       
Query: 317 aagattggtgttcactttgtgacattacattcagattctacacaatctcgaatgttggtc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aagattggtgttcactttgtgacattacattcagattctacacaatctcgaatgttggtc 877

                                                                       
Query: 377 tgtctgtcacccgctgatgccttgtccacctgcctcagagactcgttccacacagacaaa 436
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tgtctgtcacccgctgacgccttgtccacctgcctcagagactcgttccacacagacaaa 817

                                                                       
Query: 437 gggactcagagggtctgcagcataaggtaggaaggtgaactctcatggccccctcattca 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gggactcagagggtctgcagcataaggtaggaaggtgaactctcatggccccctcattca 757

                                                                       
Query: 497 tcagcccaagatcaagtgcatgagaggcagtgccagggtgtaactaaaaagtcacattgt 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tcagcccaagatcaagtgcatgagaggcagtgccagggtgtaactaaaaagtcacattgt 697

                                                 
Query: 557 ctgtaagagataacattaatttactggtaaatttatga 594
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctgtaagagataacattaatttactggtaaatttatga 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_m23.g1 MSMg01no452_m23.g1 CHROMAT_FILE:
MSMg01no452_m23.g1 PHD_FILE: MSMg01no452_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:29 2005
         (573 letters)



>mm_chr11_60070330_60071302
          Length = 973

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgatacaacatagtcaccatatcatactagactggcctcagagtcctgtgtgcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgatacaacatagtcaccatatcatactagactggcctcagagtcctgtgtgcccta 260

                                                                       
Query: 61  ggatgcctagccgagccctcctgcaggctacgttaggggccaatgatggtgtattcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgcctagccgagccctcctgcaggctacgttaggggccaatgatggtgtattcaagg 320

                                                                       
Query: 121 taggtgggtccacagagtaggtaacacacgatcaccacctgaagaatcaggaccttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtgggtccacagagtaggtaacacacgatcaccacctgaagaatcaggaccttggtt 380

                                                                       
Query: 181 tgctgcaggtgtcaggagtgaagtctgggaaccagagatactcagtgctcctactgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgcaggtgtcaggagtgaagtctgggaaccagagatactcagtgctcctactgactt 440

                                                                       
Query: 241 aggccaagggtattcatctcagtttcaggagcagtctgatgttcaggtctcttgcagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggccaagggtattcatctcagtttcaggagcagtctgatgttcaggtctcttgcagtca 500

                                                                       
Query: 301 gcagtttccttgtttgtctcctgtacttagctgggagctccctagagcagaagccgtatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtttccttgtttgtctcctgtacttagctgggagctccctagagcagaagccgtatc 560

                                                                       
Query: 361 tcctactgtccatgacacttagactgtgctcagtgctggaccagaagaaagttttaccat 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctactgtccacgacacttagactgtgctcagtgctggaccagaagaaagttttaccat 620

                                                                       
Query: 421 gccttgctctataggaactaagagcttggagtggggagtgggaactccaagtagcagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccttgctctataggaactaagagcttggagtggggagtgggaactccaagtagcagaac 680

                                                                       
Query: 481 cactgggcatgtgtattaccaaagcgcaggagcatcagagccaagtttcctgggtgacca 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 cactgggcatgtgtattaccaaagcacaggagcatcagagccaagtttcctgggtgacca 740

                                            
Query: 541 gtgtgtgtattcagcaaagtgggagatgcagaa 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgtgtattcagcaaagtgggagatgcagaa 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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