NNTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTACTATGCTGGACTTGAACTTTGAGTCAAGTTAATCCTAAC
ATTCCTTGACTTGGTTTTATCAGGGTATGCAGAAAGAGGCGAAGAAAAAA
AAGACAATATTTGAGCTCTCAAGTTTTTGTTTAACCTAAATTTTTTGATG
ACTTTTGTTCTTTGGAAGGTTATTTATACTTTATTCTTGATCCATGTGAT
CCTCTATATGTACATGGACATGAATTTCCCCCAGTATTCTTCTATCCTAT
CTTTGTTGCCACAGTGACAGATACTGAAAGCATGAGAATACATTTCCTTC
CCATTTCAGAAAAAACTCAGCAGCAGACAGAAACTATTCTGTTTGTCAAA
AGTACATGCTAGAGAATGAATAAAAATGATATAAGCTACATTTTCATAAT
CACAGTTAGTCCAATTATTACTTTAATGAAATACAAAGCCGTTTAATGTA
CACATCTGTTGCGGTTTGAATTGTTAGATACCAGTTTCCTTTGAAGATGA
AACAGATCATGTTGAAGCTCTGCTTGATAATGACCCTATGCAAGATGCAA
TGGTAGTAAAGGACCCCTTTGAAGTGTTGAGTAGCTTCAAAGAAGCAGTG
AAAGATCCTGTCACAGCCTGGCCCAGGAAGCTGAGTGGCATGGGGTACAC
TGGATCTGTTGGAGTGCTGTAGCAATGGAGAAACTGTGTAGGATAAATAT
TC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCCCTATACCTCA
TTTTTAATTGGAATATTTAGGTAATTGATGTTTAATTTATTGAGTTCTTT
ACATATTTAGGCTATTAGCCTTCTGTCACGTGAACAGTAAAAATCTTTTC
CTATTCTCTAAGGTGATGTTTTCTCCTATTGAAAGTGCCATTTGCCTTAC
AGAAGTTTTTCAATTTTGTGAAGTCCCATTTATTAATTGTTTACCTCAGT
GTGTGGGCTGTTGGTGCTCTATTCAGAAAGGTGTCTTCTTGTATTCAAAG
CTATTCCCCAATTTTGCTTCTATCAGGATTACTGTATCTGGTTTTATGTT
AATCCACTTGGATTTGAGTTTTGTTTTTGAGGGTAATAGATATGGATCTA
AGTGAATTCTTCTATATGAAAACATCCAATTACATCAGCTCCTTTTGTGG
AAGATGCTTTCCATTTTTCAATGTATGATTTTGGCTTCTTTGTAAAAAAA
AAAATCAAGTGTCTGTAGGTTTGTGGGTTTATTTCTGGGCCTTTGACTCA
ATTCCCTTTACTCAACTTCCTTGATCCACCTGTTTCTATATTGATACCAT
TCAGTTTTTATTAGTACTGCTCTGTAATACAGCTTGAAATCANGGATGGT
GATGTTCTTTTATTGTACAATATTGCTTTAGCTATTCTGGGTTCTGTTTT
TCCATAN

Query= MSMg01no452_n16.b1 MSMg01no452_n16.b1 CHROMAT_FILE:
MSMg01no452_n16.b1 PHD_FILE: MSMg01no452_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:33 2005
         (705 letters)



>mm_chr11_13523159_13524263
          Length = 1105

 Score = 1286 bits (665), Expect = 0.0
 Identities = 692/701 (98%), Gaps = 1/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttactatgctggacttgaactttgagtcaagttaatcctaacattccttgact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttactatgctggacttgaactttgagtcaagttaatcctaacattccttgact 265

                                                                       
Query: 65  tggttttatcagggtatgcagaaagaggcgaagaaaaaaaagacaatatttgagctctca 124
           ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 tggctttatcagggtatgcagaaagaggcgaagaaaaaaa-gacaatatttgagctctca 324

                                                                       
Query: 125 agtttttgtttaacctaaattttttgatgacttttgttctttggaaggttatttatactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtttttgtttaacctaaattttttgatgacttttgttctttggaaggttatttatactt 384

                                                                       
Query: 185 tattcttgatccatgtgatcctctatatgtacatggacatgaatttcccccagtattctt 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 tattcttgatccatgtgatcctctatatgtacatggacatggatttcccccagtattctt 444

                                                                       
Query: 245 ctatcctatctttgttgccacagtgacagatactgaaagcatgagaatacatttccttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatcctatctttgttgccacagtgacagatactgaaagcatgagaatacatttccttcc 504

                                                                       
Query: 305 catttcagaaaaaactcagcagcagacagaaactattctgtttgtcaaaagtacatgcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catttcagaaaaaactcagcagcagacagaaactattctgtttgtcaaaagtacatgcta 564

                                                                       
Query: 365 gagaatgaataaaaatgatataagctacattttcataatcacagttagtccaattattac 424
           ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 565 gagaatgaataaaaatgatatgagctacattttcataatcatagttaatccaattattac 624

                                                                       
Query: 425 tttaatgaaatacaaagccgtttaatgtacacatctgttgcggtttgaattgttagatac 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tttaatgaaatacaaagccgtttaatgtacacatctgttgcagtttgaattgttagatac 684

                                                                       
Query: 485 cagtttcctttgaagatgaaacagatcatgttgaagctctgcttgataatgaccctatgc 544
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagttttctttgaagatgaaacagatcatgttgaagctctgcttgataatgaccctatgc 744

                                                                       
Query: 545 aagatgcaatggtagtaaaggacccctttgaagtgttgagtagcttcaaagaagcagtga 604
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggatgcaatggtagtaaaggacccctttgaagtgttgagtagcttcaaagaagcagtga 804

                                                                       
Query: 605 aagatcctgtcacagcctggcccaggaagctgagtggcatggggtacactggatctgttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagatcctgtcacagcctggcccaggaagctgagtggcatggggtacactggatctgttg 864

                                                    
Query: 665 gagtgctgtagcaatggagaaactgtgtaggataaatattc 705
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gagtgctgtagcaatggagaaactgtgtaggataaatattc 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)