BAC Information

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BAC

Clone NameMSMg01-452N17
Chromosome11 (Build37)
Map Location 27,242,521 - 27,243,234
singlet/doubletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452N17.T7 (MSMg01no452_n17.b1)MSMg01-452N17.TJ (MSMg01no452_n17.g1)
ACCAG540009AG540010
length766779
length of high quality
(start - end)		719 (46 - 764)635 (76 - 710)
definitionCHROMAT_FILE: MSMg01no452_n17.b1 PHD_FILE: MSMg01no452_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:33 2005CHROMAT_FILE: MSMg01no452_n17.g1 PHD_FILE: MSMg01no452_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATTACTACATTTCTAAAGTCTGAAGCCATGAAAAATGTTATCC
AACAGAATTTTTTACCCCCAAATCATGAAAAAAATAGCAAATGATAAGAG
GTTGATGGAATAACAAATGAGAAAGCAATCAAATGTAATACAACATTCTT
GGAGCTCAGACCATGTAGATTTTAGTTAATAGGTATTCCCAGGGATACCT
ATCAATAAGGCTCATTCTGTACGTCAGATATTCAGAGATGGCTGACATGT
CATATATGTTAAATCCTTTCTTGGCTCTAGGAAGCTTCTTAATCATTCTA
CATCTTTTAAAAAATACATTCATTGACAATCAGATATGAGTTTACTATGC
TAATTTGAAGCTTTAGGGTAAAGTATGTAAACTTCTGAATTATGCTTGTA
GACCATTTTTAAATGAAACAGACTCAGTTGCCAAAGTTAATACTAATTAA
AACAGATTTAACTGTATCTTTGATATAACACAAAGTTGCTTAAGTTGCCT
CTCCCACAGGAGATATTTTTAGCTTGAGAAGATTTTGAAAATATCACATT
GTCATGTATTTCACTGCTGTGATATGTTAGTACAACTAGATGGACTTACT
GAAACTAAATATTCCTGCTGAAAGCCTCTAGAATTATAATTATCTACACT
GACATGAAAGGAGACCTTTCGCTGCTGATATGAACTACACTGATTAATTA
GTAATTGAATCTGCCA

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAGAACCTGGAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCTTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTTACATGACACATATGCTGACAAGGATGTGGAGAAAGAGGAAC
ACTCCTCCTTTGTTGGTAGGGTTGTAAGCTTGTATATCCACTCTGGATAT
CAGTCTGGCGGTTCCTCCGAAAATTGAACATAGTATTACTGGAGGATCCT
ACAATACCTCTCCTTGGTATATATCCAGAAAATGTTTCAACTGGTAAGAA
GGACACTTGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGTCCCTCAACCGAGGAATTAATACATTAAATG
TAGTATATTTACACAATGGAGTACTATTTAGCTATTAAAAAGATTGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGACATCATCCTAAGTG
TGGTAACCCAATCACAAAAGAACATCCATGATATATACTAACTGATAAGT
GGATATTAGCCCAGAAACTTAAAATACACACATTACAAGATACAATCTGC
AAAACACATGANACTCAAGAAGAATGAAGACCAAAGTGTGAACACTTTGT
CCCTTCTTAGAANTGGGAACAAATACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_n17.b1 MSMg01no452_n17.b1 CHROMAT_FILE:
MSMg01no452_n17.b1 PHD_FILE: MSMg01no452_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:33 2005
         (719 letters)



>mm_chr11_27242317_27243434
          Length = 1118

 Score = 1232 bits (637), Expect = 0.0
 Identities = 696/717 (97%), Gaps = 5/717 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattactacatttctaaagtctgaagccatgaaaaatgttatccaacagaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattactacatttctaaagtctgaagccatgaaaaatgttatccaacagaatt 264

                                                                       
Query: 65  ttttacccccaaatcatgaaaaaaatagcaaatgataagaggttgatggaataacaaatg 124
           ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttatctccaaatcatgagaaaaatagcaaatgataagaggttgatggaataacaaatg 324

                                                                       
Query: 125 agaaagcaatcaaatgtaatacaacattcttggagctcagaccatgtagattttagttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaagcaatcaaatgtaatacaacattcttggagctcagaccatgtagattttagttaa 384

                                                                       
Query: 185 taggtattcccagggatacctatcaataaggctcattctgtacgtcagatattcagagat 244
           ||||||||||||||||||||||||| |||| |||||   ||| |||||||||||| ||||
Sbjct: 385 taggtattcccagggatacctatcagtaagactcat---gtatgtcagatattcacagat 441

                                                                       
Query: 245 ggctgacatgtcatatatgttaaatcctttcttggctctaggaagcttcttaatcattct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggctgacatgtcatatatgttaaatcctttcttggctctaggaagcttcttaatcattct 501

                                                                       
Query: 305 acatcttttaaaaaa-tacattcattgacaatcagatatgagtttactatgctaatttga 363
           ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acatcttttaaaaaaatatatgcattgacaatcagatatgagtttactatgctaatttga 561

                                                                       
Query: 364 agctttagggtaaagtatgtaaacttctgaattatgcttgtagaccatttttaaatgaaa 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agctttaaggtaaagtatgtaaacttctgaattatgcttgtagaccatttttaaatgaaa 621

                                                                       
Query: 424 cagactcagttgccaaagttaatactaattaaaacagatttaactgtatctttgatataa 483
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagactcagctgccaaagttaatactaattaaaacagatttaactgtatctttgatataa 681

                                                                       
Query: 484 cacaaagttgcttaagttgcctctcccaca-ggagatatttttagcttgagaagattttg 542
           ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 682 cacaaagttgcctaagttgcctctcccacaaggagatttttttagcttgagaagattttg 741

                                                                       
Query: 543 aaaatatcacattgtcatgtatttcactgctgtgatatgttagtacaactagatggactt 602
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 aaaatatcacattggcatgtattttactgctgtgatatgttagtacaactagatggactt 801

                                                                       
Query: 603 actgaaactaaatattcctgctgaaagcctctagaattataattatctacactgacatga 662
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 802 actgaaactaaatattcctgctgaaagcctctagaatcataattatctacactgacatga 861

                                                                    
Query: 663 aaggagacctttcgctgctgatatgaactacactgattaattagtaattgaatctgc 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aaggagacctttcgctgctgatatgaactacactgattaattagtaattgaatctgc 918


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1118
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1108
Effective search space:   785572
Effective search space used:   785572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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